Locus 2777

Sequence ID 3L_DroMel_CAF1
Location 7,859,429 – 7,859,519
Length 90
Max. P 0.508794
window4336

overview

Window 6

Location 7,859,429 – 7,859,519
Length 90
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 81.99
Mean single sequence MFE -21.42
Consensus MFE -13.16
Energy contribution -13.33
Covariance contribution 0.17
Combinations/Pair 1.18
Mean z-score -1.74
Structure conservation index 0.61
SVM decision value -0.05
SVM RNA-class probability 0.508794
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7859429 90 - 23771897
-UGA--GUCUGGGUUAUGUAACCCCAUUCCAAAGCUAAGUCUACUUGGCAUCUAGAACUUUCCUGUU-UUCUUCGUUGGCAAC----AAAAUGUCAAU
-.((--((..(((((....))))).))))....((((((....))))))....(((((......)))-))....(((((((..----....))))))) ( -21.10)
>DroSec_CAF1 15018 90 - 1
-UGA--GUCUGGGUUGUGUAACCCCAUUCCAAAGCCAAGUCUUCUUGGCAUCUAGAACUUUCCUGUU-UUCUUCGUUGGCAAC----AAAAUGUCAAU
-.((--((..(((((....))))).))))....((((((....))))))....(((((......)))-))....(((((((..----....))))))) ( -22.70)
>DroSim_CAF1 15149 90 - 1
-UGA--GUCUGGGUUGUGUAACCCCAUUCCAAAGCCAAGUCUUCUUGGCAUCUAGAACUUUCCUGUU-UUCUUCGUUGGCAAC----AAAAUGUCAAU
-.((--((..(((((....))))).))))....((((((....))))))....(((((......)))-))....(((((((..----....))))))) ( -22.70)
>DroEre_CAF1 18400 89 - 1
-AUAAAGGCU-GGUUAUGUAACCCCAUUCCAGUGCCAAGACU--UUGGCAUCUAAAACUUUCCUGUU-UUCUUCGUUGGCAAC----AAAAUGUCAAU
-......(((-((..(((......))).)))))(((((....--)))))....(((((......)))-))....(((((((..----....))))))) ( -19.50)
>DroYak_CAF1 7834 89 - 1
-GUA--GACUGGGUUAUGUAACCCCAUUCCGGAGCCAAGACU--UUGGCAUCUAGAACUUUGCUGUUCUUCUUCGUUGGCAAC----AAAAUGUCAAU
-...--(((.(((((....))))).....(((((((((....--)))))....(((((......)))))..))))(((....)----))...)))... ( -22.60)
>DroAna_CAF1 18430 84 - 1
AAGA--GUCGGGGUU---CGACCCCAUUCCA--UCUGAGACUUGAGAGCAUGUAAAAA------GUU-UUCUUCGUUGGCAACAAACAAAAUGUCAAU
..((--(((((((..---...))))..((..--...)))))))((((((.........------)))-)))...(((((((..........))))))) ( -19.90)
>consensus
_UGA__GUCUGGGUUAUGUAACCCCAUUCCAAAGCCAAGACUUCUUGGCAUCUAGAACUUUCCUGUU_UUCUUCGUUGGCAAC____AAAAUGUCAAU
..........(((((....))))).........(((((......))))).........................(((((((..........))))))) (-13.16 = -13.33 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:25 2006