| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,855,840 – 7,855,946 |
| Length | 106 |
| Max. P | 0.834122 |
| Location | 7,855,840 – 7,855,946 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 87.18 |
| Mean single sequence MFE | -26.00 |
| Consensus MFE | -22.18 |
| Energy contribution | -23.26 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.834122 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7855840 106 + 23771897 UUUGGCCCAAGGGAGCGAACCGAAUUUGCUAAUAAAAAA----A--AUAUACCUAAACCUCUUGAAUUUUGUAAAAAGUGGCUGCAACUAUCAGCCGCCGGCCAAUUGAGCC .((((((((((((((((((.....)))))).(((.....----.--.)))........)))))).............(((((((.......))))))).))))))....... ( -28.60) >DroSec_CAF1 11649 104 + 1 UUUGGCCCAAGGGAGCGAAUCGAAUAUGCUAACAAA--A----A--AUAUGCCUCAACCUCUUGAAUUCUGUAAAAAGUGGCUGCAACUAUCAGCCGCCGGCCAAUUGAACC .((((((((((((...((.....((((.........--.----.--))))...))...)))))).............(((((((.......))))))).))))))....... ( -25.40) >DroSim_CAF1 11733 105 + 1 UUUGGCCCAAGGGAGCAAAUCGAAUAUGCUAACAAA-AA----A--AUAUGCCUCAACCUCUUGAAUUCUGUAAAAAGUGGCUGCAACUAUCAGCCGCCGGCCAAUUGAACC .((((((((((((((((.........))))..((..-..----.--...)).......)))))).............(((((((.......))))))).))))))....... ( -26.90) >DroEre_CAF1 12475 107 + 1 UUUUGCCCUGGGGAGCGAACCGAAUUUGCCUAAAAA-AA----UAUAUGUACCUCAGCCUCUUGAAUUCUGUAAAAAGUGGCUGCAACUAUCAGCCGCAGGCCAAUUGAAAC ..(((.((((.((.(((((.....))))).......-..----...........(((((.(((............))).)))))..........)).)))).)))....... ( -24.00) >DroYak_CAF1 4186 111 + 1 UUUUGCCCUAGGGAGCGAACCAAAUUUGCUAAAAAA-AAAACAGAUAUAUACCUCAGCCUCUUGAGUUCUGUAAAAAGUGGCUGCAACUAUCAGCCGCAGGCCAAUUGAAAC ..(((.(((....((((((.....))))))......-...(((((.......(((((....))))).))))).....(((((((.......)))))))))).)))....... ( -25.10) >consensus UUUGGCCCAAGGGAGCGAACCGAAUUUGCUAAAAAA_AA____A__AUAUACCUCAACCUCUUGAAUUCUGUAAAAAGUGGCUGCAACUAUCAGCCGCCGGCCAAUUGAACC .((((((((((((((((((.....))))))............................)))))).............(((((((.......))))))).))))))....... (-22.18 = -23.26 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:22 2006