Locus 2774

Sequence ID 3L_DroMel_CAF1
Location 7,852,286 – 7,852,387
Length 101
Max. P 0.998878
window4332

overview

Window 2

Location 7,852,286 – 7,852,387
Length 101
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 96.10
Mean single sequence MFE -26.88
Consensus MFE -26.04
Energy contribution -26.08
Covariance contribution 0.04
Combinations/Pair 1.03
Mean z-score -1.96
Structure conservation index 0.97
SVM decision value 3.26
SVM RNA-class probability 0.998878
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7852286 101 + 23771897
UUCUCUAUGGCCAUUUAAAGUUCUAGUUCAGGUUGAAUGGAAUUCGAGUGGAAUUUAUGGCACUUGUGGCGUUUAAACAAGCGACAAGUAA----AUAAAGGAAC
((((.(((.(((((...((((((((.(((..(((......)))..))))))))))))))))((((((.((..........)).))))))..----))).)))).. ( -27.20)
>DroSec_CAF1 8159 105 + 1
UUCUCUAUGACCAUUUAAAGUUCUAGUUCAGGUUGAAUGGAAUUCGAGUGGAAUUUAUGGCACUUGUGGCGUUUAAACAAGCGACAAGUAAAUAAAUAAAGGAAC
...(((....((((((..(((((((.(((.....)))))))))).)))))).((((((...((((((.((..........)).))))))..))))))...))).. ( -25.30)
>DroSim_CAF1 8238 105 + 1
UUCUCUAUGGCCAUUUAAAGUUCUAGUUCAGGUUGAAUGGAAUUCGAGUGGAAUUUAUGGCACUUGUGGCGUUUAAACAAGCGACAAGUAAACAAAUAAAGGAAC
((((.(((.(((((...((((((((.(((..(((......)))..))))))))))))))))((((((.((..........)).))))))......))).)))).. ( -27.20)
>DroEre_CAF1 8991 105 + 1
UUCUCUAUGGCCAUUUAAAGUUCUAGUUCAGGUUGAAUGGAAUUCGAGUGGAAUUUAUGGCACUUGUGGCGUUUGAACAAGCGACAAGUAAAUAAGUAAAGGAAC
((((.(((.(((((...((((((((.(((..(((......)))..))))))))))))))))((((((.((..........)).))))))......))).)))).. ( -27.50)
>DroYak_CAF1 603 105 + 1
UUCUCUAUGGCCAUUUAAAGUUCUAGUUCAGGUUGAAUGGAAUUCGAGUGGAAUUUAUGGCACUUGUGGCGUUUGCACAAGCGACAAGUAAGCAAAUAAAGGAAC
((((.(((.(((((...((((((((.(((..(((......)))..))))))))))))))))((((((.((..........)).))))))......))).)))).. ( -27.20)
>consensus
UUCUCUAUGGCCAUUUAAAGUUCUAGUUCAGGUUGAAUGGAAUUCGAGUGGAAUUUAUGGCACUUGUGGCGUUUAAACAAGCGACAAGUAAACAAAUAAAGGAAC
((((.(((.(((((...((((((((.(((..(((......)))..))))))))))))))))((((((.((..........)).))))))......))).)))).. (-26.04 = -26.08 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:21 2006