Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 7,849,831 – 7,849,923 |
Length | 92 |
Max. P | 0.967456 |
Location | 7,849,831 – 7,849,923 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 88.91 |
Mean single sequence MFE | -36.10 |
Consensus MFE | -31.16 |
Energy contribution | -31.96 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.17 |
Mean z-score | -1.91 |
Structure conservation index | 0.86 |
SVM decision value | 1.61 |
SVM RNA-class probability | 0.967456 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7849831 92 - 23771897 UACGGAAGUUUCACUGUACUUUUCGGCGAUCGCCGAGGGUGAUUGCUGAAGGGGAACGCGGACAAACGCAGCGAAACGCGUUCACUGCGGGU .((....))....(((((((((((((((((((((...))))))))))))))))(((((((......))).(((...)))))))..))))).. ( -40.20) >DroSec_CAF1 5637 92 - 1 UACUGAAGUUUCACUGUAGUUUUCGGCGAUCGCCGAGGGUGGUUGCUGAAGGGGAACGCGGACAAACGCAGCGAAACGCGUUCACUGCGGGU .............(((((((((((((((((((((...))))))))))))))..(((((((......))).(((...)))))))))))))).. ( -38.20) >DroSim_CAF1 5686 92 - 1 UACUGAAGUUUCACUGUAGUUUUCGGCGAUCGCCGAGGGUGGUUGCUGAAGGGGAACGCGGACAAACGCAGCGAAACGCGUUCACUGCGGGU .............(((((((((((((((((((((...))))))))))))))..(((((((......))).(((...)))))))))))))).. ( -38.20) >DroEre_CAF1 6352 90 - 1 UACUGAUGCUUCACUGUAGU-UUCGCCGAUCGC-GAGGGUGGUUGCUGAAGGGGAACGCGGACAAACGCAGCGAAACGCGUUCACUGCGGGU ...(((....)))(((((((-((((.(((((((-....))))))).))))...(((((((......))).(((...)))))))))))))).. ( -29.50) >DroAna_CAF1 7273 92 - 1 UAUCGAUGUCCUACUGUAGCGGCUGCUGAUCGCCGAGGGUGGUCGCUGAAGGGGAACGCUUCGAAACGCAGCGAAACGCGUUCACUGCGGGC ..((((..((((.((.(((((((..((..((...)).))..))))))).)))))).....))))..(((((.(((.....))).)))))... ( -34.40) >consensus UACUGAAGUUUCACUGUAGUUUUCGGCGAUCGCCGAGGGUGGUUGCUGAAGGGGAACGCGGACAAACGCAGCGAAACGCGUUCACUGCGGGU .............((((((((((((((((((((.....)))))))))))))).(((((((......))).(((...))))))).)))))).. (-31.16 = -31.96 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:20 2006