| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,840,948 – 7,841,041 |
| Length | 93 |
| Max. P | 0.565133 |
| Location | 7,840,948 – 7,841,041 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 78.01 |
| Mean single sequence MFE | -29.05 |
| Consensus MFE | -12.48 |
| Energy contribution | -13.85 |
| Covariance contribution | 1.37 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.65 |
| Structure conservation index | 0.43 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.565133 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7840948 93 - 23771897 AAGAGAAAGAGCUCAAGAGAGCAUUGUGGGGGCGUGUGAUAGUAAGCUUUUGCACGGUUUUAUUUAUUUUUUUGUUU----------------UCUAUUUUGCCGUGGU ..((((.((((..((((((((....((((((.((((..(.((....)).)..)))).))))))...))))))))..)----------------))).))))........ ( -23.00) >DroSim_CAF1 62577 92 - 1 AAGAGAAAGAGCUCAAGAGAGCAAAGUGGGGGCGUGUGAUAGUGAGCUUUUGCACGGUUUUAUUUGUUUUUUU-UUU----------------UCUGUUUUGCCGUGGU .(((((((((((((....)))).((((((((.((((..(.((....)).)..)))).)))))))).....)))-)))----------------)))............. ( -26.90) >DroEre_CAF1 51237 102 - 1 AAGGGAAAGAGCGUAAGAGAGAAAUGGGUGGGUGUGUGAUAGUAAGCUUUUGCACGGAUUUAUUUGUUUUUCU-CUCUCUCUC------UCUCCCUACUUUGCUGUGGU .(((((.((((.(..((((((((((..((((((.((((..((....))....)))).))))))..))))))))-))..).)))------).)))))............. ( -39.20) >DroYak_CAF1 52678 108 - 1 AAGAGAAAGAGCGUAAGAGAGCCAUGGGUGGGCGUGUGAUAGUAAGCUUUUGCACGGUUUUAUUUGUUUUUUU-CUUUGUUUUUUCUAUUCUCUCUUUUGUGCCUUGGU ...((((((((((.(((((((..((..(((((((((..(.((....)).)..))))..)))))..))..))))-)))))))))))))...................... ( -27.10) >consensus AAGAGAAAGAGCGCAAGAGAGCAAUGGGGGGGCGUGUGAUAGUAAGCUUUUGCACGGUUUUAUUUGUUUUUUU_CUU________________UCUAUUUUGCCGUGGU ........(((...((((((((...((((((.((((..(.((....)).)..)))).))))))..)))))))).)))................................ (-12.48 = -13.85 + 1.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:17 2006