Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 7,840,779 – 7,840,874 |
Length | 95 |
Max. P | 0.997524 |
Location | 7,840,779 – 7,840,874 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 92.98 |
Mean single sequence MFE | -21.60 |
Consensus MFE | -19.86 |
Energy contribution | -19.74 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.15 |
Mean z-score | -1.95 |
Structure conservation index | 0.92 |
SVM decision value | 2.88 |
SVM RNA-class probability | 0.997524 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7840779 95 + 23771897 UCUAAUUUUGCGUGUGCGUACAUAAGCUACUAUUUGCUUAAGGCUCCGCCGCUAGGUAAAUAAAAAAUCACCAUAGAAAUGGAAAUAGCAAAAAA- .....(((((((((.((........)))))((((((((((.(((...)))..))))))))))........((((....)))).....))))))..- ( -23.40) >DroSec_CAF1 51058 93 + 1 UCUAAUUUUGCGUGUGCGUACAUAAGCUACUAUUUGCAUAAGGCUCCGCCGCCAGGUAAAUAAAAAAUCACCAUAGAAAUGGAAAUAGCAAAA--- .....(((((((((.((........)))))(((((((....(((......)))..)))))))........((((....)))).....))))))--- ( -19.80) >DroSim_CAF1 62410 93 + 1 UCUAAUUUUGCGUGUGCGUACAUAAGCUACUAUUUGCUUAAGGCUCCGCCGCCAGGUAAAUAAAAAAUCACCAUAGAAAUGGAAAUAGCAAAA--- .....(((((((((.((........)))))(((((((((..(((......))))))))))))........((((....)))).....))))))--- ( -21.10) >DroEre_CAF1 51067 96 + 1 UCUAAUUUUGCGUGUGCGUACAUCAGCCACUAUUUGCUUAAGGCUCCGCCGCCAGGUAAAUAAAAAAUCAACAUAGAAAUGGAAAUGGCGAAGAAA .....(((((((((.((........)))))(((((((((..(((......)))))))))))).........................))))))... ( -20.80) >DroYak_CAF1 52507 96 + 1 UCUAAUUUUGCGUGUGCGUACAUAAGCCACUCUUUGCUUAAGGCUCCGCCGCCAGGUAAAUACAAAAUCGCCAUAGAAAUGGAAAUUGCAAAAAAA .....((((((((((...(((.(((((........))))).(((......)))..))).))))..(((..((((....))))..)))))))))... ( -22.90) >consensus UCUAAUUUUGCGUGUGCGUACAUAAGCUACUAUUUGCUUAAGGCUCCGCCGCCAGGUAAAUAAAAAAUCACCAUAGAAAUGGAAAUAGCAAAAAA_ .....(((((((((.((........)))))(((((((((..(((......))))))))))))........((((....)))).....))))))... (-19.86 = -19.74 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:16 2006