Locus 277

Sequence ID 3L_DroMel_CAF1
Location 790,674 – 790,766
Length 92
Max. P 0.560348
window417

overview

Window 7

Location 790,674 – 790,766
Length 92
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 83.17
Mean single sequence MFE -27.85
Consensus MFE -14.94
Energy contribution -14.80
Covariance contribution -0.14
Combinations/Pair 1.06
Mean z-score -2.83
Structure conservation index 0.54
SVM decision value 0.05
SVM RNA-class probability 0.560348
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 790674 92 - 23771897
AGUUGCUGUUG---CUGUGUCAGCUAAUCAGACGGCAAGUAUCUCAUCUUCGAGGACUACUAGCAACUGCCAAAACACAGG---------CAAGACAGACAACA
.((((((((((---(((((((.(((........)))......(((......)))))).)).)))...((((........))---------)).))))).)))). ( -27.20)
>DroVir_CAF1 172349 87 - 1
UGUUGCUGUUU---GUGUGUCAGCUAAUCAGCUGGCAAGUAUCUCAUCUUCGAGGACUACUAGCAACUGCCAAAACAACAG---------CGAAACAGC-----
..((((((((.---((.((((((((....))))))))(((.((((......)))))))....((....))....)))))))---------)))......----- ( -25.90)
>DroGri_CAF1 191478 91 - 1
UGUUGUUGUUU---GUGUGUCAGCUAAUCAGCUGGCAAGUAUCUCAUCUUCGAGGACUACUAGCAACUGCCAAAACAACGG---------CGAAGCAGCCAA-A
.((.((((((.---((.((((((((....))))))))(((.((((......))))))))).)))))).)).........((---------(......)))..-. ( -28.30)
>DroYak_CAF1 153061 101 - 1
AGUUGCUGUUG---CUGUGUCAGCUAAUCAGACGGCAAGUAUCUCAUCUUCGAGGACUACUAGCAACUGCCAAAACACAGGCAACACAGGCAACACAGACAACA
.((((((((((---(((((((.(((........)))......(((......)))))).)).))))))((((........)))).....)))))).......... ( -30.10)
>DroMoj_CAF1 169763 85 - 1
UGUUGCUGUUU---GUGUGUCAGCUAAUCAGCUGGCAAGUAUCUCAUCUUCGAGGACUACUAGCAACUGCCAAAACAACAG---------CGCAACA-------
(((.((((((.---((.((((((((....))))))))(((.((((......)))))))....((....))....)))))))---------))))...------- ( -25.20)
>DroAna_CAF1 168893 86 - 1
AGUUGCUGUUGCGGCUGUGUCAGCUAAUCAGACGGCAAGUAUCUCAUCUUCGAGGACUACUAGCAACUGCCAAAACAACAG---------CAACA---------
.((((((((((.(((((...)))))...(((...((.((((((((......))))..)))).))..)))......))))))---------)))).--------- ( -30.40)
>consensus
AGUUGCUGUUG___CUGUGUCAGCUAAUCAGACGGCAAGUAUCUCAUCUUCGAGGACUACUAGCAACUGCCAAAACAACAG_________CAAAACAG______
.(((((((..............(((........))).(((.((((......)))))))..)))))))..................................... (-14.94 = -14.80 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:09 2006