Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 7,834,521 – 7,834,627 |
Length | 106 |
Max. P | 0.708319 |
Location | 7,834,521 – 7,834,627 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 85.23 |
Mean single sequence MFE | -19.35 |
Consensus MFE | -13.08 |
Energy contribution | -12.80 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.33 |
Mean z-score | -2.02 |
Structure conservation index | 0.68 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.708319 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7834521 106 + 23771897 UAAAAAAAUCUAAAGGGUACUUAAAUUCCGCUAAAGGAAGAAAAGGCAUUUGCCCAGACCGUCUGCAAAAUAAAAAGACGAAUAUAAUGCUACCUGAGAAACCAUU ........(((...((((((((...((((......))))...)))(((((.........(((((...........))))).....)))))))))).)))....... ( -21.24) >DroSec_CAF1 44772 100 + 1 UAAAUAAAUCUAAAGGGUACUCAAAUUCCGCUAAAGGAAGAAAAGG------CCCAUGCCGUCUGCAAAAUAAAAAGACGAAUAUAAUGCUACCUGAGAAACCAUU ........(((...(((((......((((......)))).....((------(....)))((((...........))))...........))))).)))....... ( -18.50) >DroSim_CAF1 56098 106 + 1 UAAAUAAAUCUAAAGGGUACUCCAAUUCCGCUAAAGGAAGAAAAGGCAUUUGCCCAUGCCGUCUGCAAAAUAAAAAGACGAAUAUAAUGCUACCGGAGAAACCAUU ..............((...((((..((((......)))).....((((((.((....))(((((...........))))).....))))))...))))...))... ( -23.50) >DroEre_CAF1 44760 95 + 1 UAAAUCAAUCGAAAGAGUACUCAAAUUCCGAAAA--GGAGAAA-------UUCCAAGACCGUUUGCAAAAUAAAAAGACGAAA--CCUGCUACCUGAGAAACCAUU ........((....))...((((..((((.....--))))...-------.........(((((...........)))))...--.........))))........ ( -12.80) >DroYak_CAF1 45942 106 + 1 UAAAUCAAUUUAAAGGGUACUCGAAUUCCGCAAAAGGCAGAAAAGGCAUUUGCCUAGAACGUCUGCAAAAUAAAAAGACGAAUAUAAUGCUACCUGAGAAACCAUU ..............((...((((......(((..(((((((.......)))))))....(((((...........))))).......)))....))))...))... ( -20.70) >consensus UAAAUAAAUCUAAAGGGUACUCAAAUUCCGCUAAAGGAAGAAAAGGCAUUUGCCCAGACCGUCUGCAAAAUAAAAAGACGAAUAUAAUGCUACCUGAGAAACCAUU ..............((...((((..((((......))))....................(((((...........)))))..............))))...))... (-13.08 = -12.80 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:14 2006