Locus 2767

Sequence ID 3L_DroMel_CAF1
Location 7,825,320 – 7,825,414
Length 94
Max. P 0.601138
window4324

overview

Window 4

Location 7,825,320 – 7,825,414
Length 94
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 75.05
Mean single sequence MFE -10.17
Consensus MFE -0.82
Energy contribution -1.22
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.38
Structure conservation index 0.08
SVM decision value 0.14
SVM RNA-class probability 0.601138
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7825320 94 + 23771897
AACUAAAACU---AAA--UUAGAGCACCACCUUAAAAU-GUGUGGAACAAUAAAUUUAGAAA------AAAGUUUUUUUUUUACAAAACUUUUGGCCAGACAGAAA
........((---(((--((......(((((.......-).)))).......)))))))..(------((((((((........)))))))))............. ( -12.72)
>DroSec_CAF1 35772 92 + 1
AACUAAAAAA---AAAAUAUAGAGCACAACCUUAAAAU-GUGUGGAACAAUAAAUUCAGAAA------AAAGUU----UCAUACAAAACUUUUGGCCAGACUGAAA
..((((((..---........(((......)))....(-(((((((((..............------...)))----)))))))....))))))........... ( -11.43)
>DroSim_CAF1 47361 94 + 1
AACUAAAAAAAGAAAAAUAUAGAGCACCACCUUAAAAU-GUGUGGAACAAUAAAUUCAGAAA-------AAGUU----UCAUACAAAACUUUUGGCCAGACUGAAA
..........................(((((.......-).)))).........(((((.((-------(((((----(......)))))))).......))))). ( -11.60)
>DroEre_CAF1 35528 84 + 1
AGCUACAAC-----AA--AUAUAGCAACACCUUUAAACUU--------AAUAAAUCAA---AAAAAAAAAAGUU----GAAUUCAAAACUUUUGGCCAGACAGAAA
.((((....-----..--...))))...............--------..........---......(((((((----........)))))))............. (  -6.60)
>DroYak_CAF1 36481 96 + 1
AACUACAAAA----AA--AUAGAGCAACACCUUUACAUUUUGUACAACAAUAAAUUAAGAAAAAAAAAAACGUU----GAAUACAAAACUUUUGGCCAGACAGAAA
...(((((((----..--.(((((......)))))..)))))))((((.......................)))----)..........(((((......))))). (  -8.50)
>consensus
AACUAAAAAA___AAA__AUAGAGCACCACCUUAAAAU_GUGUGGAACAAUAAAUUAAGAAA______AAAGUU____UAAUACAAAACUUUUGGCCAGACAGAAA
.........................................................................................(((((......))))). ( -0.82 =  -1.22 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:13 2006