Locus 2766

Sequence ID 3L_DroMel_CAF1
Location 7,818,112 – 7,818,204
Length 92
Max. P 0.572877
window4323

overview

Window 3

Location 7,818,112 – 7,818,204
Length 92
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 82.33
Mean single sequence MFE -23.71
Consensus MFE -20.39
Energy contribution -20.42
Covariance contribution 0.03
Combinations/Pair 1.05
Mean z-score -1.31
Structure conservation index 0.86
SVM decision value 0.08
SVM RNA-class probability 0.572877
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7818112 92 - 23771897
CCGCGCC-------ACCCA------UCCCGCACAUAGUCUGCCACUAAUGUGGCGUACGUUUUUUGGCCAACACUUUAUCAAGAUGGCAGACGCCUUGGCUCAUG
..(((((-------((...------....(((.......))).......))))))).........((((((..(((....)))..(((....))))))))).... ( -23.34)
>DroSim_CAF1 40372 92 - 1
C-CCGCCA------ACCCU------UGCCGCACAUAGUCUGCCACUAAUGUGGCGUACGUUUUUUGGCCAACACUUUAUCAAGAUGGCAGACGCCUUGGCUCUUG
.-..((((------(....------.((((......((.((((((....)))))).))......)))).................(((....))))))))..... ( -26.40)
>DroEre_CAF1 28473 92 - 1
C-GCACAC------ACCCG------UCCUGUACAUAGCCUGCCACUAAUGUGGCGUACGUUUUUUGGCCAACACUUUAUCAAGAUGGCAGACGCCUUGGCUCUUG
.-((.((.------...((------((..((((.......(((((....)))))))))........((((...(((....))).)))).))))...))))..... ( -21.31)
>DroWil_CAF1 68195 102 - 1
CCACAACAGGCAGUCCCCUUUGAGAUCCUCUA---UGUCUGCCACUAAUGUGGCGUACGUUUUUUGGCUAACACUUUAUCAAGAUGGCAGACGCCUUGGCUCCAA
(((....((((.(((.((.((..(((((...(---(((.((((((....)))))).)))).....))..........)))..)).))..))))))))))...... ( -24.40)
>DroAna_CAF1 43259 92 - 1
C-UCUCCU------CCUCC------UCCUCUACAUAGUAUGCCACUAAUGUGGCGUACGUUUUUUGGCCAACACUUUAUCAAGAUGGCAGACGCCUUGGCUUUUA
.-......------.....------...........(((((((((....))))))))).......((((((..(((....)))..(((....))))))))).... ( -25.60)
>DroPer_CAF1 29324 92 - 1
C-UCCCCC------UCUCC------UCCCUUGCAUAGUCUGCCACUAAUGUGGCGUACGUUUUUUGGCCAACACUUUAUCAAGAUGGCAGACGCCUUGGCUCCCA
.-......------.....------...........((.((((((....)))))).)).......((((((..(((....)))..(((....))))))))).... ( -21.20)
>consensus
C_GCACCA______ACCCC______UCCCGUACAUAGUCUGCCACUAAUGUGGCGUACGUUUUUUGGCCAACACUUUAUCAAGAUGGCAGACGCCUUGGCUCUUA
....................................((.((((((....)))))).)).......((((((..(((....)))..(((....))))))))).... (-20.39 = -20.42 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:12 2006