| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,814,970 – 7,815,067 |
| Length | 97 |
| Max. P | 0.635154 |
| Location | 7,814,970 – 7,815,067 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 83.17 |
| Mean single sequence MFE | -20.70 |
| Consensus MFE | -14.23 |
| Energy contribution | -15.26 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.635154 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7814970 97 + 23771897 --CCU--CUCUUUGUUUGCUCAACAAAUUAAGUCAAUUUUUUUUUGGCAGCUGCCUCAGCUCGUUUUGUUGCUACUGUUGUUGGCUUAAAUUAAUGCAUGU --...--...((((((.....))))))((((((((((.......(((((((.((........))...))))))).....))))))))))............ ( -19.00) >DroSec_CAF1 25682 96 + 1 --CCU--CUCUUUGUUUGCUCAACAAAUUAAGUCCAUUUU-UUUUGGCAGCUGCCUCAGCUCGUUUUGUUGCUGCUGUUGUUGGCUUAAAUUAAUGCAUGU --...--..........((.((((((.......(((....-...)))((((.((..(((......)))..)).))))))))))))................ ( -18.00) >DroSim_CAF1 37307 96 + 1 --CCU--CUCUUUGUUUGCUCAACAAAUUAAGUCAAUUUU-UUUUGGCAGCUGCCUCAGCUCGUUUUGUUGCUGCUGUUGUUGGCUUAAAUUAAUGCAUGU --...--...((((((.....))))))((((((((((...-....((((((.((..(((......)))..)).))))))))))))))))............ ( -21.21) >DroEre_CAF1 25310 76 + 1 --CCG--CUCUUUGUUUGCUCAACAAAUUAAGUCAAUUU---UUUGGCAGCUGC------------------CACCGUUGUUGGCUUAAAUUAAUGCAAGU --..(--(..((((((.....))))))((((((((((..---..((((....))------------------)).....))))))))))......)).... ( -19.30) >DroYak_CAF1 25729 81 + 1 --CCUCCCUCUUUGUUUGCUCAACAAAUUAAGUCAAUUU---UUUGGCAGCUGC---------------UGCUGCUGUUGUUGGCUUAAAUUAAUGCAUGU --........((((((.....))))))((((((((((..---..(((((((...---------------.)))))))..))))))))))............ ( -22.10) >DroAna_CAF1 39771 96 + 1 CGCAC--CUCUUUGUUUCCCUAACAAAUUAAGUCAAUUU---UUUGGCAGCUGCCUCAGCUCGUUGUGUUGCUGCUGUUGUUGGCUCAAAUUAAUGCAUGU .(((.--...((((((.....))))))...(((((((..---..(((((((.((..(((....))).)).)))))))..)))))))........))).... ( -24.60) >consensus __CCU__CUCUUUGUUUGCUCAACAAAUUAAGUCAAUUU___UUUGGCAGCUGCCUCAGCUCGUUUUGUUGCUGCUGUUGUUGGCUUAAAUUAAUGCAUGU ..........((((((.....))))))((((((((((.......(((((((...................)))))))..))))))))))............ (-14.23 = -15.26 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:11 2006