Locus 2763

Sequence ID	3L_DroMel_CAF1
Location	7,800,050 – 7,800,140
Length	90
Max. P	0.968223

overview

Window 7

Location	7,800,050 – 7,800,140
Length	90
Sequences	6
Columns	111
Reading direction	forward
Mean pairwise identity	78.49
Mean single sequence MFE	-37.68
Consensus MFE	-29.00
Energy contribution	-28.08
Covariance contribution	-0.91
Combinations/Pair	1.29
Mean z-score	-2.36
Structure conservation index	0.77
SVM decision value	1.62
SVM RNA-class probability	0.968223
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7800050 90 + 23771897
AGCUGCUGCAUUCACAUUCACAUGCGCCAAAUGUUGCAGAUGAUGUUGCAGCAGUUGCGUGGGUGGCGGCAGCGUUC---CACUUGCCACAUU------------------
((((((((((...((((.((..((((.(....).))))..))))))))))))))))(.(..(((((((....))..)---))))..)).....------------------ ( -33.40)
>DroPse_CAF1 10466 93 + 1
CGCCGCUGCAUUCACAUUCACAUGCGCCAAAUGCUGCAAAUGAUGCUGCAACAAUUGCGUGGGCGGCGGCAGUGUUCCUCCAUUGGCAACAUU------------------
.((((((((...........((((((.....(((.(((.....))).))).....)))))).))))))))((((((((......)).))))))------------------ ( -34.50)
>DroGri_CAF1 26151 108 + 1
UGCUGCCGCAUUCACAUUGACAUGCGCCAAAUGUUGCAAGUGAUGCUGCAACAGUUGCGUGGGCGGCGGCAACGCGC---CGUUUGCCACAUGUGGCGUGAUGCCAGCAAC
(((((((((..((.....))((((((.....(((((((........)))))))..)))))).)))))((((.(((((---((..((...))..))))))).)))))))).. ( -48.50)
>DroSec_CAF1 9742 90 + 1
AGCUGCUGCAUUCACAUUCACAUGCGCCAGAUGUUGCAGAUGAUGUUGCAGCAGUUGCGUGGGCGGCGGCAGCGUUC---CACUUGCCACAUU------------------
.((((((((.....(((....)))((((.(.((((((((......))))))))....)...))))))))))))....---.............------------------ ( -32.10)
>DroYak_CAF1 10308 90 + 1
CGCUGCUGCAUUCACAUUUACGUGCGCCAAAUGUUGCAGAUGAUGUUGCAGCAGUUGCGUGGGCGGCGGCAGCGUGC---CACUUGCCACAUU------------------
.((((((((...........(((.((((((.((((((((......)))))))).))).))).)))))))))))(((.---(....).)))...------------------ ( -35.90)
>DroMoj_CAF1 27182 104 + 1
AGCCGCUGCAUUCACAUUGACAUGUGCCAAAUGUUGCAAGUGAUGCUGCAACAGUUGCGUGGGCGGCGGCAAUGCAC---CGUUGGCAACAUUGCCCGAGUUGCCAG----
.((((((((...(((((....)))))(((..(((((((........)))))))......))))))))))).......---...(((((((.((....))))))))).---- ( -41.70)
>consensus
AGCUGCUGCAUUCACAUUCACAUGCGCCAAAUGUUGCAAAUGAUGCUGCAACAGUUGCGUGGGCGGCGGCAGCGUUC___CACUUGCCACAUU__________________
.((((((((.....(((....)))((((((.(((((((........))))))).))).))).))))))))......................................... (-29.00 = -28.08 +  -0.91)

alignment

secondary structure

dotplot

Window 8

Location	7,800,050 – 7,800,140
Length	90
Sequences	6
Columns	111
Reading direction	reverse
Mean pairwise identity	78.49
Mean single sequence MFE	-35.58
Consensus MFE	-23.31
Energy contribution	-22.78
Covariance contribution	-0.52
Combinations/Pair	1.33
Mean z-score	-2.25
Structure conservation index	0.66
SVM decision value	1.42
SVM RNA-class probability	0.952332
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7800050 90 - 23771897
------------------AAUGUGGCAAGUG---GAACGCUGCCGCCACCCACGCAACUGCUGCAACAUCAUCUGCAACAUUUGGCGCAUGUGAAUGUGAAUGCAGCAGCU
------------------...((((((.(((---...)))))))))...........(((((((((((((((.(((..(....)..))).))).))))...)))))))).. ( -31.40)
>DroPse_CAF1 10466 93 - 1
------------------AAUGUUGCCAAUGGAGGAACACUGCCGCCGCCCACGCAAUUGUUGCAGCAUCAUUUGCAGCAUUUGGCGCAUGUGAAUGUGAAUGCAGCGGCG
------------------..((((.((......))))))..(((((.((.....(((.((((((((......)))))))).))).(((((....)))))...)).))))). ( -32.60)
>DroGri_CAF1 26151 108 - 1
GUUGCUGGCAUCACGCCACAUGUGGCAAACG---GCGCGUUGCCGCCGCCCACGCAACUGUUGCAGCAUCACUUGCAACAUUUGGCGCAUGUCAAUGUGAAUGCGGCAGCA
(((((((.(((((((..(((((((.((((((---(((......)))))..........((((((((......)))))))))))).)))))))...)))).)))))))))). ( -46.40)
>DroSec_CAF1 9742 90 - 1
------------------AAUGUGGCAAGUG---GAACGCUGCCGCCGCCCACGCAACUGCUGCAACAUCAUCUGCAACAUCUGGCGCAUGUGAAUGUGAAUGCAGCAGCU
------------------...((((((.(((---...))))))))).((....))..(((((((((((((((.(((..(....)..))).))).))))...)))))))).. ( -32.10)
>DroYak_CAF1 10308 90 - 1
------------------AAUGUGGCAAGUG---GCACGCUGCCGCCGCCCACGCAACUGCUGCAACAUCAUCUGCAACAUUUGGCGCACGUAAAUGUGAAUGCAGCAGCG
------------------...((((...(((---((.....)))))...))))....((((((((((((...((((..(....)..))).)...))))...)))))))).. ( -31.40)
>DroMoj_CAF1 27182 104 - 1
----CUGGCAACUCGGGCAAUGUUGCCAACG---GUGCAUUGCCGCCGCCCACGCAACUGUUGCAGCAUCACUUGCAACAUUUGGCACAUGUCAAUGUGAAUGCAGCGGCU
----..(....)...((((((((.(((...)---))))))))))(((((.....(((.((((((((......)))))))).))).(((((....)))))......))))). ( -39.60)
>consensus
__________________AAUGUGGCAAAUG___GAACGCUGCCGCCGCCCACGCAACUGCUGCAACAUCAUCUGCAACAUUUGGCGCAUGUGAAUGUGAAUGCAGCAGCU
.....................(((((.((((......)))))))))...........(((((((((((((((.(((........))).)))...))))...)))))))).. (-23.31 = -22.78 +  -0.52)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:08 2006