Locus 2762

Sequence ID 3L_DroMel_CAF1
Location 7,793,886 – 7,793,988
Length 102
Max. P 0.653088
window4316

overview

Window 6

Location 7,793,886 – 7,793,988
Length 102
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 93.18
Mean single sequence MFE -10.46
Consensus MFE -10.10
Energy contribution -9.94
Covariance contribution -0.16
Combinations/Pair 1.05
Mean z-score -1.08
Structure conservation index 0.97
SVM decision value 0.25
SVM RNA-class probability 0.653088
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7793886 102 + 23771897
UAUAAAGAUUAAACAAACUAUAAACAA-AAAAGACAAAAACCAAAUUACCGUUUGAUUUGCAAAUGAAACCCAAAAACGGAGAUUUCCUGCCUGUAAAACAGA
.....(((((((((.............-......................)))))))))(((...(((((((......)).).)))).)))(((.....))). (  -9.75)
>DroSec_CAF1 3589 103 + 1
UAUAAAGAUUAAACAAACUAUAAACAACAAAAGACAAAAACCAAAUUACCGUUUGAUUUGCAAAUGAAACCCAAAAAUGGAGAUUUCCUGCCUGUAAAACAGA
.....(((((((((....................................)))))))))(((...((((((((....))).).)))).)))(((.....))). ( -10.42)
>DroSim_CAF1 16614 103 + 1
UAUAAAGAUUAAACAAACUAUAAACAACAAAAGACAAAAACCAAAUUACCGUUUGAUUUGCAAAUGAAACCCAAAAAUGGAGAUUUCCUGCCUGUAAAACAGA
.....(((((((((....................................)))))))))(((...((((((((....))).).)))).)))(((.....))). ( -10.42)
>DroEre_CAF1 3688 92 + 1
A---AAAAUUAAACAA-------ACGA-AAAAGACAAAAACCAAAUUACCGUUUGAUUUGCAAAUGAAACCCAAAAAUGGAGAUUUCCUGCCUGUAAAACAGA
.---.........(((-------(((.-.....................))))))....(((...((((((((....))).).)))).)))(((.....))). ( -11.25)
>DroYak_CAF1 3646 102 + 1
UAAAAAGAUUAAACAAACUAAAAACGA-AAAAGACAAAAACCAAAUUACCGUUUGAUUUGCAAAUGAAACCCAAAAAUGGAGAUUUCCUGCCUGUAAAACAGA
.....(((((((((.............-......................)))))))))(((...((((((((....))).).)))).)))(((.....))). ( -10.45)
>consensus
UAUAAAGAUUAAACAAACUAUAAACAA_AAAAGACAAAAACCAAAUUACCGUUUGAUUUGCAAAUGAAACCCAAAAAUGGAGAUUUCCUGCCUGUAAAACAGA
.....(((((((((....................................)))))))))(((...(((((((......)).).)))).)))(((.....))). (-10.10 =  -9.94 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:06 2006