Locus 2761

Sequence ID 3L_DroMel_CAF1
Location 7,791,818 – 7,791,922
Length 104
Max. P 0.969938
window4315

overview

Window 5

Location 7,791,818 – 7,791,922
Length 104
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 75.49
Mean single sequence MFE -24.54
Consensus MFE -10.73
Energy contribution -10.73
Covariance contribution 0.00
Combinations/Pair 1.11
Mean z-score -2.28
Structure conservation index 0.44
SVM decision value 1.65
SVM RNA-class probability 0.969938
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7791818 104 - 23771897
ACGACAAGGCUGAUUUCACUAGUUCAUUAGAAAUCCGUUUAAUAGAUGUGUGAAUUGU----CCUAUUGA-----CGAAUUCAGUCA-AAAACUUAUGCACUUAGUGAAAACAG
.........(((.((((((((((.(((.((.....((((.....))))..((((((((----(.....))-----).))))))....-....)).))).)).)))))))).))) ( -21.10)
>DroSec_CAF1 1548 109 - 1
ACGACAAGGCUGAUUUCACUAGCUCAUUAGAAAGUAUUUUAAUAGUUAUGUGAAUUAU----ACUAUUGAAUUCACUUUUUGAGUCA-AAAACUAAUGCACUUAGUGGAAACAG
..(((..(((((.......)))))..(((((((((..(((((((((.(((.....)))----)))))))))...)))))))))))).-...(((((.....)))))(....).. ( -24.00)
>DroSim_CAF1 14583 109 - 1
ACGACAAGGCUGAUUUCACUAGCGCAUUAGAAAGUAUUUUAAUAGUUAUGUGAAUUAU----ACUAUUGAAUUCACUUUUUGAGUCA-AAAACUAAUGCACUUAGUGGAAACAG
.........(((.(((((((((.((((((((((((..(((((((((.(((.....)))----)))))))))...)))))(((...))-)...))))))).).)))))))).))) ( -28.10)
>DroEre_CAF1 1576 113 - 1
ACGAA-AGGCUGAUUUCACUAGCUUAUUAGAAAGCAUAUUAAAUGAUAUGUAAAUUGCUGAUAUAGAUGUAUCCCAUUUCUGAGUCGUUAAAAUAAUGCAGUUAGUGGAAACAG
.(...-.).(((.(((((((((((..((((((((((((((....)))))))........(((((....)))))...)))))))(.(((((...))))))))))))))))).))) ( -28.80)
>DroYak_CAF1 1613 103 - 1
ACGAAAAGGCUGAUUUCACUAGUUUAUUAGAAAGCAUUUAAAACGAUAUGUAAAUUGCGGAUAUAAAUUUAUCACAUUU-----------AACUAAUGCACUUAGUGGAAACAG
.........(((.((((((((((.((((((...(((((((..........)))).))).((((......))))......-----------..)))))).)).)))))))).))) ( -20.70)
>consensus
ACGACAAGGCUGAUUUCACUAGCUCAUUAGAAAGCAUUUUAAUAGAUAUGUGAAUUGU____ACUAUUGAAUCCACUUUUUGAGUCA_AAAACUAAUGCACUUAGUGGAAACAG
.........(((.(((((((((..((((((..............................................................))))))...))))))))).))) (-10.73 = -10.73 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:05 2006