Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 7,789,971 – 7,790,062 |
Length | 91 |
Max. P | 0.992458 |
Location | 7,789,971 – 7,790,062 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -24.40 |
Consensus MFE | -23.92 |
Energy contribution | -24.29 |
Covariance contribution | 0.37 |
Combinations/Pair | 1.07 |
Mean z-score | -2.36 |
Structure conservation index | 0.98 |
SVM decision value | 2.33 |
SVM RNA-class probability | 0.992458 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7789971 91 + 23771897 UUCUCCUCCUCGGUGUUUAGUUAAUUUGCUUUUA-----GUUUUUAGCAUAAAAUAAAUAUUAAAGCGGAGCACGACGCCGUGAGGGGU-UUCUUGU ..((((((..(((((((..((...((((((((.(-----((.((((........)))).)))))))))))..))))))))).)))))).-....... ( -27.40) >DroSec_CAF1 30163 91 + 1 UUCUCCUCCUCGGUGUUUAGUUAAUUUGCUUUUA-----GUUUUUAGCAUAAAAUAAAUAUUAAAGCGGAGCACGACGCCGUGAGGGGU-UUCUUGU ..((((((..(((((((..((...((((((((.(-----((.((((........)))).)))))))))))..))))))))).)))))).-....... ( -27.40) >DroEre_CAF1 30602 93 + 1 UUCUCCUCCUUUGUGUUUAGUUAAUCUGCUUUUAGU----UUUUUAGCAUAAAAUAAAUAUUAAAGCGGAGCACGACGCCGUGAGGGGUUUUCUUGU ..((((((....(((((..((...((((((((.(((----..((((........)))).)))))))))))..)))))))...))))))......... ( -21.70) >DroYak_CAF1 32387 97 + 1 UUCUCCUCCUCUGUGUUUAGUUAAUUUGCUUUUUUUUUAGUUUUUAGCAUAAAAUAAAUAUUAAAGCGGAGCACGACGCCGUGAGGGGUUUUCUUGU ..((((((..(.(((((..((...((((((((..(.((.(((((......))))).)).)..))))))))..))))))).).))))))......... ( -21.10) >consensus UUCUCCUCCUCGGUGUUUAGUUAAUUUGCUUUUA_____GUUUUUAGCAUAAAAUAAAUAUUAAAGCGGAGCACGACGCCGUGAGGGGU_UUCUUGU ..((((((..(((((((..((...((((((((.......(((((......))))).......))))))))..))))))))).))))))......... (-23.92 = -24.29 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:04 2006