Locus 276

Sequence ID 3L_DroMel_CAF1
Location 785,526 – 785,617
Length 91
Max. P 0.752548
window416

overview

Window 6

Location 785,526 – 785,617
Length 91
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 72.92
Mean single sequence MFE -25.51
Consensus MFE -15.47
Energy contribution -15.22
Covariance contribution -0.25
Combinations/Pair 1.25
Mean z-score -1.41
Structure conservation index 0.61
SVM decision value 0.48
SVM RNA-class probability 0.752548
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 785526 91 + 23771897
GAUAAUGGCAGCACUAAUAAAUUGCGGCCAACAUGUUGCAUGCUGCACGAGUGCGGG-------GUGCUCCCCUCUCCAC-CGCAAGAGCCCCCUUCUC
.......((((((.........((((((......))))))))))))..(((...(((-------(.((((..........-.....))))))))..))) ( -28.86)
>DroSec_CAF1 142351 73 + 1
GAUAAUGGCAGCACUAAUAAAUUGCGGCCAACAUGUUGCAUGCUGCACGAGUGCGGG-------GUGCUCCC-------------------CCCUUCUC
((....((.((((((.......((((((......))))))..(((((....))))))-------))))).))-------------------....)).. ( -23.40)
>DroEre_CAF1 148335 71 + 1
GAUAAUGGCAGCACUAAUAAAUUGCGGCCAACAUGUUGCAUGCUGCACGAGUGCGGG-------GUGUUCCCCUCUGC---------------------
.......((((((((.......(((((((((....)))...))))))..)))))(((-------(....))))..)))--------------------- ( -23.20)
>DroWil_CAF1 163234 78 + 1
GAUAAUGGCAGCACUAAUAAAUUGCAGCCAACAUGUUGCAUGUUGCACGAGUUUU---------GCAGUCGG--CCUCCUGCUCC----UGCU------
.......((((((.........((((((......)))))))))))).........---------((((..((--(.....))).)----))).------ ( -19.50)
>DroYak_CAF1 147841 86 + 1
GAUAAUGGCAGCACUAAUAAAUUGCGGCCAACAUGUUGCAUGCUGCACGAGUGCGGG-------GUGUUCCCCUCUGCCU-CCU-----UGCCCCACUC
......(((((((((.......(((((((((....)))...))))))..)))))(((-------(....))))..)))).-...-----.......... ( -27.70)
>DroAna_CAF1 163889 81 + 1
GAUAAUGGCAGCACUAAUAAAUUGCGGCCAACAUGUUGCAUGCUGCACGAGUCCAGGCAGCGCUGUGCUGCG--CUGCGU-UGC---------------
(((....((((((.........((((((......))))))))))))....)))...(((((((......)))--))))..-...--------------- ( -30.40)
>consensus
GAUAAUGGCAGCACUAAUAAAUUGCGGCCAACAUGUUGCAUGCUGCACGAGUGCGGG_______GUGCUCCC__CUGC_U_C_C_______CC______
.......((((((.........((((((......))))))))))))..(((..(..........)..)))............................. (-15.47 = -15.22 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:07 2006