Locus 2759

Sequence ID 3L_DroMel_CAF1
Location 7,789,348 – 7,789,440
Length 92
Max. P 0.536205
window4313

overview

Window 3

Location 7,789,348 – 7,789,440
Length 92
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 82.84
Mean single sequence MFE -19.27
Consensus MFE -14.43
Energy contribution -14.43
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.43
Structure conservation index 0.75
SVM decision value 0.01
SVM RNA-class probability 0.536205
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7789348 92 - 23771897
CUCAGUUGCCGGGCACUUGGCAGCUGUUUAGU--UUAAGUGAGCUAUGAUUU------UUAUAAAAACCUAAU----GAAAAA-------AAUAUCAGAAAACCC-----CAA-AAA--
..((((((((((....))))))))))..((((--((....))))))...(((------((((.........))----))))).-------...............-----...-...-- ( -18.00)
>DroPse_CAF1 35195 110 - 1
CUCAGUUGCCGGGCACUUGGCAGCUGUUUAGUUGUUAAGUGAGCUAUGAUUUUU-UUUUUAUAUAAACCUAAACAAAGA-AAA-------AACAUUAAAAAACCAAUCUACAAAAUGGA
.(((...((....((((((((((((....)))))))))))).))..)))(((((-(((((..............)))))-)))-------))..........(((..........))). ( -20.64)
>DroSec_CAF1 29554 92 - 1
CUCAGUUGCCGGGCACUUGGCAGCUGUUUAGU--UUAAGUGAGCUAUGAUUU------UUAUAAAAACCUAAU----GA-AAA-------AAUAUCAGAAAACCC-----CAAAAAA--
..((((((((((....))))))))))..((((--((....))))))((((((------((((.........))----))-)).-------...))))........-----.......-- ( -18.10)
>DroEre_CAF1 30000 94 - 1
CUCAGUUGCCGGGCACUUGGCAGCUGGUUAGU--UUAAGUGAGCUAUGAUUU------UUAUAAAAACCUAAU----GA-AAA-------AACAUGAGAAAACCC-----CAAAAAAAA
.(((((((((((....))))))))))).((((--((....))))))...(((------((((.........))----))-)))-------...............-----......... ( -19.00)
>DroYak_CAF1 31735 101 - 1
CUCAGUUGCCGGGCACUUGGCAGCUGGUUAGU--UUAAGUGAGCUAUGAUUU------UUAUAAAAACCUAAU----GA-AAAAAACAAAAAUAUCAGAAAACCC-----CAAAAAAAA
.(((((((((((....))))))))))).((((--((....))))))...(((------((((.........))----))-)))......................-----......... ( -19.00)
>DroPer_CAF1 35711 111 - 1
CUCAGUUGCCGGGCACUUGGCAGCUGUUUAGUUGUUAAGUGAGCUAUGAUUUUUUUUUUUAUAUAAACCUAAACAAAGA-AAA-------AACAUUAAAAAACCAAUCUACAAAAUGGA
.(((...((....((((((((((((....)))))))))))).))..)))(((((((.((((........)))).)))))-)).-------............(((..........))). ( -20.90)
>consensus
CUCAGUUGCCGGGCACUUGGCAGCUGUUUAGU__UUAAGUGAGCUAUGAUUU______UUAUAAAAACCUAAU____GA_AAA_______AACAUCAGAAAACCC_____CAAAAAA_A
..((((((((((....))))))))))............................................................................................. (-14.43 = -14.43 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:03 2006