Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 7,781,235 – 7,781,355 |
Length | 120 |
Max. P | 0.990664 |
Location | 7,781,235 – 7,781,355 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.09 |
Mean single sequence MFE | -27.63 |
Consensus MFE | -16.94 |
Energy contribution | -18.57 |
Covariance contribution | 1.62 |
Combinations/Pair | 1.27 |
Mean z-score | -2.72 |
Structure conservation index | 0.61 |
SVM decision value | 2.23 |
SVM RNA-class probability | 0.990664 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7781235 120 + 23771897 UGCUAUCUUAUGAAAAUGAGUCAACAAAUGAUUCAUCUUCAUGAACAUUCAUGUACCCAAAUACGAUAUGAGCAACAGCUCAGGUGUGGAAAUUCCUACAAAGUUGUUUAAGUCUUUCAC .(((...(((((((.((((((((.....)))))))).))))))).(((...((((......))))..))))))(((((((....(((((......))))).)))))))............ ( -29.10) >DroSec_CAF1 21575 105 + 1 UGCUAUCUUAUGAAAAUGAGUCAACAAAUGAUUCAUCUU---------------ACCUAAAUACGAUAUGAGCAACAGUUCAGGUGUGGAAAUGCCUACAAAGUUCUUCAAGUCUUUCAC ..........(((((((((((((.....))))))))...---------------..........(((.((((.(((.....((((((....)))))).....))).)))).)))))))). ( -22.30) >DroYak_CAF1 23166 114 + 1 UACUAUCUCACGAAAGUGAGUCAGCAAGUGAUUCAACUUUCUCUACAUU----UACCCAAAUACAUGAUGAGCCACAGCUCAGGUAUGGAAAUGCCAGCAAAGUUGUUCAAGUCUUUU-- ..((..(((((....)))))..))....(((..(((((((((...((((----(.((...((((....(((((....))))).)))))))))))..)).))))))).)))........-- ( -31.50) >consensus UGCUAUCUUAUGAAAAUGAGUCAACAAAUGAUUCAUCUU__U__ACAUU____UACCCAAAUACGAUAUGAGCAACAGCUCAGGUGUGGAAAUGCCUACAAAGUUGUUCAAGUCUUUCAC .(((..(((((....))))).((((...........................................(((((....)))))(((((....)))))......))))....)))....... (-16.94 = -18.57 + 1.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:59 2006