Locus 2752

Sequence ID 3L_DroMel_CAF1
Location 7,763,303 – 7,763,399
Length 96
Max. P 0.757786
window4302

overview

Window 2

Location 7,763,303 – 7,763,399
Length 96
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 81.80
Mean single sequence MFE -23.56
Consensus MFE -15.20
Energy contribution -15.16
Covariance contribution -0.04
Combinations/Pair 1.13
Mean z-score -1.96
Structure conservation index 0.65
SVM decision value 0.49
SVM RNA-class probability 0.757786
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7763303 96 - 23771897
AAAGUUCACU------------------GCGAUGACAUAAUUGUUUUGGAUUUGAUUAGCCCCGCAAAAGGGAUUUCAAUUAG-----CCUUUAAGCAGCGAAAGCUAUUAACACUAAA
.(((((((..------------------(((((......)))))..))))))).......(((......))).......((((-----...((((..(((....))).))))..)))). ( -21.80)
>DroSec_CAF1 10857 96 - 1
AAAGUUCACU------------------GCGAUGACAUAAUUGUUUUGGAUUUGAUUAGCCCGCAAAAGGGGAUUUCAAUUAG-----CCUUUAAGCAGCGAACGCUAUUAACACUAAA
...((((.((------------------((...((((....))))..((..((((....(((......)))....))))....-----)).....)))).))))............... ( -22.70)
>DroEre_CAF1 10731 101 - 1
AAAGUUCACU------------------GCGAUGACAUAAUUGUUUUGGAUUUGAUUAACCCGCAAAAAGGGAUUUCAAUUAGUAUGGCUUUUAAGCAGCGAAAGCUGUUAACACUAAA
.(((((((..------------------(((((......)))))..)))))))......(((.......)))......................((((((....))))))......... ( -24.30)
>DroYak_CAF1 10889 96 - 1
AAAGUUCACG------------------GCGAUGACAUAAUUGUUUUGGAUUUGAUUAGCCCGCAA-AAGGGAUUUCAAUUAG----GUUUUUAAGCAGCGCAAGCUGUUAACACUAAA
.(((((((..------------------(((((......)))))..)))))))((....(((....-..)))...))..((((----(((....((((((....))))))))).)))). ( -29.00)
>DroAna_CAF1 10396 114 - 1
AAAGUUCAACCCCACAAAGUUCAUCAGCAUGAUGACAUAAUUGUUUUGGAUUUGAUUUUCCAGCAAAAGUGGCUUUCAAUUAG-----CAUUUAAGCAGAAAAAGCUGUUAACACUAAA
..................((.((((.....))))))....((((..((((........)))))))).(((((((.......))-----).....(((((......)))))..))))... ( -20.00)
>consensus
AAAGUUCACU__________________GCGAUGACAUAAUUGUUUUGGAUUUGAUUAGCCCGCAAAAAGGGAUUUCAAUUAG_____CCUUUAAGCAGCGAAAGCUGUUAACACUAAA
............................(((((......)))))(((((..((((....(((.......)))...))))...............((((((....))))))....))))) (-15.20 = -15.16 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:52 2006