| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,753,763 – 7,753,862 |
| Length | 99 |
| Max. P | 0.946388 |
| Location | 7,753,763 – 7,753,862 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 77.07 |
| Mean single sequence MFE | -21.70 |
| Consensus MFE | -15.28 |
| Energy contribution | -15.17 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.70 |
| SVM decision value | 1.36 |
| SVM RNA-class probability | 0.946388 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7753763 99 + 23771897 UAUUAACAUAUUAACCAUUAUAUC--UCGA-----UUAACUCACUUUUCAAUCGCUGCAGUUCCUGCUGCGUGCGAUCCAAUACUCCAGCGAAUAGUCGACUGCAC ........................--((((-----(((..((.((.((..(((((((((((....)))))).)))))..))......)).)).)))))))...... ( -19.30) >DroPse_CAF1 1383 95 + 1 -----------CCAGAAUUCUCUCUCUCUCUUAUUUUUACUCACUUUUCAGUCGCUGCAGCUCCUGCUGCGUGCGCUCCAGGACGCUGGCAAACAGUCGACUACAU -----------......................................(((((((((((((((((..((....))..))))).)))).....))).))))).... ( -24.70) >DroSec_CAF1 1353 98 + 1 -AUGAAUAUAUUAACCAUUAUAUC--UCGA-----UUAACUCACUUUUCAGUCGCUGCAGUUCCUGCUGCGUGCGAUCCAAUACUCCAGCGAAUAGUCGACUGCAC -.((((((((........))))).--))).-----...............(((((((((((....)))))).))))).........((((((....))).)))... ( -20.30) >DroSim_CAF1 1354 99 + 1 UAAGAACAUGUUAACCAUUAUAUC--UCGA-----UUAACUCACUUUUCAGUCGCUGCAGUUCCUGCUGCGUGCGAUCCAAUACUCCAGCGAAUAGUCGACUGCAC ........................--((((-----(((..((.((.((..(((((((((((....)))))).)))))..))......)).)).)))))))...... ( -19.60) >DroEre_CAF1 1300 99 + 1 UACUAACAUUAUAACAAUUAUAUC--GCAA-----UUGACUCACUUUUCAGUCGCUGCAGUUCCUGCUGCGUGCGAUCCAAUACACCGGCGAAUAGUCGACUACAC ................(((..(((--(((.-----..((((........))))...(((((....))))).))))))..)))....((((.....))))....... ( -21.60) >DroPer_CAF1 842 95 + 1 -----------CCAGAAUUCUCUCUCUCUCUUAUUUGUACUCACUUUUCAGUCGCUGCAGCUCCUGCUGCGUGCGCUCCAGGACGCUGGCAAACAGUCGACUACAU -----------......................................(((((((((((((((((..((....))..))))).)))).....))).))))).... ( -24.70) >consensus _A__AACAU_UUAACAAUUAUAUC__UCGA_____UUAACUCACUUUUCAGUCGCUGCAGUUCCUGCUGCGUGCGAUCCAAUACUCCAGCGAAUAGUCGACUACAC ..................................................(((((((((((....)))))).))))).........((((((....))).)))... (-15.28 = -15.17 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:51 2006