Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 7,744,580 – 7,744,672 |
Length | 92 |
Max. P | 0.632700 |
Location | 7,744,580 – 7,744,672 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 77.59 |
Mean single sequence MFE | -23.08 |
Consensus MFE | -10.95 |
Energy contribution | -10.90 |
Covariance contribution | -0.05 |
Combinations/Pair | 1.14 |
Mean z-score | -2.03 |
Structure conservation index | 0.47 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.632700 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7744580 92 - 23771897 ----C-----AAC--CACCUUCCUC---CAACCACCG--AGCAGUGGUUGUUAUGGCAUUCAGUGAACGCAUUUUGUAACAUGA-CAAAAUAGCGUAGCAUACAUUUCA ----(-----(((--(((....(((---........)--))..)))))))............((..(((((((((((......)-)))))).)))).)).......... ( -21.70) >DroSec_CAF1 9087 92 - 1 ----C-----AAC--CUACUUCCUC---CAACCACCG--GGCAGUGGUUGUUAUGGCAUUCAGUGAACGCAUUUUGUAACAUGA-CAAAAUAGCGUAGCAUACAUUUCA ----.-----...--......((..---(((((((..--....)))))))....))......((..(((((((((((......)-)))))).)))).)).......... ( -21.40) >DroEre_CAF1 11006 92 - 1 ----C-----GAA--CACCUUCCUC---CAACCACCG--AGCAGUGGUUGUUAUGGCAUUCGGUGAACGCAUUUUGUAACAUGA-CAAAAUAGCGUAGCAUACAUUUCA ----.-----(((--((((..((..---(((((((..--....)))))))....)).....)))).(((((((((((......)-)))))).)))).........))). ( -25.90) >DroYak_CAF1 9582 99 - 1 --UCCAAAAAAUA--CACCUUGCUC---CAACCACCG--AGCAGUGGUUGUUAUGGCAUUCGGUGAACGCAUUUUGUAACAUGA-CAAAAUAGCGUAGCAUACAUUUCA --...........--((((.((((.---(((((((..--....)))))))....))))...)))).(((((((((((......)-)))))).))))............. ( -28.60) >DroMoj_CAF1 19000 99 - 1 ----U-----GUCUCUGCACUCAUACAACAACAGUUCAUUUAAAAGGUUGUUAUGGCAUUCGCUG-UCGCAUUUAGUAACAGGCGCAAAAUAACGUAGCAUACUUUUUA ----.-----..............................(((((((((((((((..((((((((-(..(.....)..))).)))...)))..))))))).)))))))) ( -19.00) >DroAna_CAF1 16269 90 - 1 CUUCCA-----A-----ACCCACUC---CAA---GCG--ACCGGUGGUUGUUAUGGCAUUCGCUGAACGCAUUUUGUAACAUGA-CAAAAUAGCGUAGCAUACAUUUCA ......-----.-----.......(---(((---(((--(((...))))))).))).....(((..(((((((((((......)-)))))).))))))).......... ( -21.90) >consensus ____C_____AAC__CACCUUCCUC___CAACCACCG__AGCAGUGGUUGUUAUGGCAUUCGGUGAACGCAUUUUGUAACAUGA_CAAAAUAGCGUAGCAUACAUUUCA ..........................................((((..(((((((((.(((...))).))((((((.........))))))..)))))))..))))... (-10.95 = -10.90 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:48 2006