| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,739,118 – 7,739,238 |
| Length | 120 |
| Max. P | 0.500000 |
| Location | 7,739,118 – 7,739,238 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.11 |
| Mean single sequence MFE | -44.57 |
| Consensus MFE | -24.09 |
| Energy contribution | -23.04 |
| Covariance contribution | -1.05 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.54 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7739118 120 + 23771897 UGGGCUGCAGAUAUGUGUAGCGGGAUAGGAGGAGCUGCUCUGAUACGAUCCUCAGCUCAUUCUGUUGCUGGAGGAUCAGUUUUUGCAGUUCGUCGUGCUUCCGCUGCAAUUGAUCCUGCA ......((((((...((((((((((((.((.(((((((...((.((((((((((((..........))).))))))).)).)).))))))).)).)).))))))))))....)).)))). ( -54.40) >DroPse_CAF1 11052 120 + 1 CGGGCUGGAAGUACGUAUAGCGGGCUAGGAGCAGCUGCUCGGACACAAUCCGCAGCUCGUCCUGUUGCUGCAUUAUCAGCUUCUGCAGCUCGUCGUGUUUGCGCUGCAGCUGAUCCUGCA ...((.(((..........((((..(((((..((((((..(((.....)))))))))..)))))...))))....((((((...(((((.((.......)).)))))))))))))).)). ( -45.20) >DroGri_CAF1 26992 120 + 1 CGGGCUGCAGAUACGUGUAGCGUGCCAGCAACAGUUGCUCGGAGACGAUGCGCAGCUCUUCCUGCUGCUGGAUGAUCAGUUUCUGCAGUUGGUCAUGCUUGCGCUGCAGCUGAUCCUGCA ..((((((((...((((.(((((((((((..(((..(((((....))).))(((((.......)))))..............)))..))))).))))))))))))))))))......... ( -51.10) >DroWil_CAF1 19136 120 + 1 UGGGCUGCAGAUAGGUAUAGCGGGCCAAUAGCAAUUGCUCUGAGACAAUUCUCAAUUCGUCUUGCUGUUGCAUUAUUAGCUUCUGCAAUUCAUCGUGUUUCCGUUGCAAUUGAUCCUGCA ((((.((((((.((.((......((.((((((((.((...(((((....)))))...))..)))))))))).....)).)))))))).))))............((((........)))) ( -28.90) >DroAna_CAF1 11607 115 + 1 -----GGCAGGUACGUGUAUCGGGCCAGAAGCAACUGCUCGGACACAAUCCUCAGCUCGUCCUGCUGCUGCAUUAUGAGCUUUUGCAACUCGUCGUGCUUGCGUUGCAGUUGAUCCUGCA -----.((((((((((((.((((((.((......)))))))))))).......(((((((..(((....)))..))))))).............))))))))..(((((......))))) ( -43.40) >DroPer_CAF1 11098 120 + 1 CGGGCUGGAAGUACGUAUAGCGGGCUAGCAGCAGCUGCUCCGACACAAUCCGCAGCUCGUCCUGUUGCUGCAUUAUCAGCUUCUGCAGCUCGUCGUGUUUGCGCUGCAGCUGAUCCUGCA ..(((((.(.(((..((..(((((((.((((.(((((....((.....)).(((((..........))))).....))))).)))))))))))..))..)))..).)))))......... ( -44.40) >consensus CGGGCUGCAGAUACGUAUAGCGGGCCAGCAGCAGCUGCUCGGACACAAUCCGCAGCUCGUCCUGCUGCUGCAUUAUCAGCUUCUGCAGCUCGUCGUGCUUGCGCUGCAGCUGAUCCUGCA ...................(((((......(((((.((...(((..............)))..)).)))))...((((((...((((((.............))))))))))))))))). (-24.09 = -23.04 + -1.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:47 2006