Locus 2747

Sequence ID 3L_DroMel_CAF1
Location 7,735,021 – 7,735,113
Length 92
Max. P 0.579890
window4296

overview

Window 6

Location 7,735,021 – 7,735,113
Length 92
Sequences 4
Columns 92
Reading direction reverse
Mean pairwise identity 85.14
Mean single sequence MFE -26.32
Consensus MFE -18.25
Energy contribution -19.12
Covariance contribution 0.88
Combinations/Pair 1.23
Mean z-score -1.56
Structure conservation index 0.69
SVM decision value 0.09
SVM RNA-class probability 0.579890
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7735021 92 - 23771897
ACUUGGUGUGCUGUAUCUGUGGGAAGGUCUCCCAAGUAGUAUACUUUGCAAGAUCUUGAGCCAUAACAAGGUCCUCUAACAGGGCUGAAUUA
.((((((((((((...((.(((((.....))))))))))))))).......(((((((........)))))))......))))......... ( -24.60)
>DroSec_CAF1 31543 92 - 1
ACUUGGUGUGAUGUAUCUGUGGGAAGGUUUACCAAGCAGUAUGCUUUGCAAGAUCUUGUGCCAUAACAAGGUCUUCUAUCAGGGCUGAAUUA
.(((((((..(.((((((((.((........))..)))).)))).)..)((((((((((......))))))))))..))))))......... ( -27.50)
>DroSim_CAF1 27665 92 - 1
ACUUGGUGUGCUGUAUCUGUGGGAAGGUCUACCAAGCAGUAUGCUUUGCAAGAUCUUGUGCCAUAACAAGGUCUUCUAUCAGGGCUGAAUUA
.(((((((.(((...((.....)).))).)))))))......((((((.((((((((((......))))))))))....))))))....... ( -28.50)
>DroYak_CAF1 30205 92 - 1
ACUUGGUGUACUUUAUCUGUGGGAAGGUCUGCCAUGUGGUUAACUUUGCAAGAUCUUGAGACCUAAGAAGGUUUUUAGGCAAGGCUGUCUAA
.(((((.((.(((.((((...(.(((((..(((....)))..))))).).))))...)))))))))).......(((((((....))))))) ( -24.70)
>consensus
ACUUGGUGUGCUGUAUCUGUGGGAAGGUCUACCAAGCAGUAUACUUUGCAAGAUCUUGAGCCAUAACAAGGUCUUCUAUCAGGGCUGAAUUA
.(((((((((((((.....(((.........))).))))))))).....((((((((((......))))))))))....))))......... (-18.25 = -19.12 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:46 2006