Locus 2744

Sequence ID 3L_DroMel_CAF1
Location 7,718,672 – 7,718,772
Length 100
Max. P 0.732677
window4291

overview

Window 1

Location 7,718,672 – 7,718,772
Length 100
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 90.78
Mean single sequence MFE -11.89
Consensus MFE -8.38
Energy contribution -8.62
Covariance contribution 0.24
Combinations/Pair 1.05
Mean z-score -2.46
Structure conservation index 0.70
SVM decision value 0.43
SVM RNA-class probability 0.732677
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7718672 100 - 23771897
GUUUAUUUCCCAUCACUGCACACACAACACUUUCGCAUACACCAGUGCAAUCAAUUUGCCAAUGAGAAAAUAAACAAGCAAAAUACUUUUUAAAAAAAAA
((((((((.((((...(((...............))).......(.((((.....))))).))).).))))))))......................... ( -10.36)
>DroSec_CAF1 15123 97 - 1
GUUUAUUUCCCAUCACUGCACACACAACAUUUUCUCAAACACCAGUGCAAUCAAUUUGCCAAUGAGAAAAUAAACAAGCAAAAUACUU---AAAAAAAAA
................(((.........(((((((((.((....))((((.....))))...)))))))))......)))........---......... ( -10.86)
>DroSim_CAF1 10600 99 - 1
GUUAAUUUCCCAUCACUGCACACACAACAUUUUCUCAAACACCAGUGCAAUCAAUUUGCCAAUGAGAAAAUAAACAAGCAAAAUACUUUU-AAAAAAAAG
................(((.........(((((((((.((....))((((.....))))...)))))))))......))).....(((((-....))))) ( -11.06)
>DroEre_CAF1 11440 94 - 1
GUUUGAUUCUCAUCACUGCACAUACAGCAUUUACUCAUACACCAGUGCAAUCAAUUUGCCAAUGGGAAAAUAAACAA-CAAAAUACUU---AAAAAAG--
(((((.(((((((...(((.......)))...............(.((((.....))))).)))))))..)))))..-..........---.......-- ( -12.80)
>DroYak_CAF1 12152 96 - 1
GUUUAUUUCUCAUCACUGCACACACAACAUUUACUCAUACACCAGUGCAAUCAAUUUGCCAAUGAGAAAAUAAACAAGCAAAAUACAU---AAAAAAA-A
(((((((((((((.((((........................))))((((.....))))..))))).)))))))).............---.......-. ( -14.36)
>consensus
GUUUAUUUCCCAUCACUGCACACACAACAUUUUCUCAUACACCAGUGCAAUCAAUUUGCCAAUGAGAAAAUAAACAAGCAAAAUACUU___AAAAAAAAA
(((((((((.(((.((((........................))))((((.....))))..))).).))))))))......................... ( -8.38 =  -8.62 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:41 2006