| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,712,260 – 7,712,367 |
| Length | 107 |
| Max. P | 0.762499 |
| Location | 7,712,260 – 7,712,367 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 78.70 |
| Mean single sequence MFE | -25.90 |
| Consensus MFE | -20.31 |
| Energy contribution | -19.48 |
| Covariance contribution | -0.83 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.762499 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7712260 107 + 23771897 -UAUG--C--CGUUUUC---UAUACCUACAUUCAUGUGCAUAUUGAGAGCCACAAUUCGAUCAUCUUGGGUAUAUGGAGCUGAGGCAACAGCAUCGAAAUCGAAAUGCACAUUUU -..((--(--(((((..---(((((((((((....)))...((((((........)))))).....))))))))..))))...))))...((((((....)))..)))....... ( -23.10) >DroVir_CAF1 13054 105 + 1 -CAACUCUA------AU---CAUACUCACAUUCAUGUGCAUAUUGAGAGCCACAAUGCGAUCGCUUUGGGUAUAGGGAGCCGACGCAUCCUCAUCGAAGUCAAAGUGCACGUUCU -........------..---.............((((((((.((((..(((.(((.((....)).))))))...((((((....)).))))........)))).))))))))... ( -25.70) >DroGri_CAF1 17674 112 + 1 AUAUAUCUAACUCUCUA---UAUACUCACAUUCAUGUGCAUGUUGAGUGCUACAAUGCGAUCGUUUUGUGUAUAGGGUGCUGAGGCAUCCUCAUCAAAAUCAAAAUGCACAUUCU .................---.............((((((((.((((((((.((((.((....)).))))))))(((((((....)))))))........)))).))))))))... ( -29.60) >DroEre_CAF1 5260 107 + 1 -CAUG--C--CAGUUUC---UAUACCUACAUUCAUGUGCAUGUUGAGAGCCACGAUUCGAUCAUUUUGGGUAUAGGGAGCCGAGGCAUCAGCAUCGAAAUCAAAGUGCACAUUUU -....--.--.......---.............((((((((.(((((..((...((((((.....))))))....))..)(((.((....)).)))...)))).))))))))... ( -24.40) >DroYak_CAF1 4801 107 + 1 -CAUC--C--CGUUUUC---UAUACCUACAUUCAUGUGCAUGUUGAGCGCCACAAUUCGAUCAUCUUGAGUAUAUGGAGCCGAGGCAUCAGCAUCGAAGUCAAAGUGCACAUUUU -....--.--.......---.............((((((((.((((((.(((..((((((.....))))))...))).))(((.((....)).)))...)))).))))))))... ( -26.30) >DroAna_CAF1 13786 109 + 1 -AAUA-----UAUUUUCAAUUAAACUUACAUUCAUGUGCAUAUUGAGAGCCACUAUUCUAUCAUUUUGGGUGUAGGGAGCUGAGGCAUCGGCAUCAAAAUCGAAGUGCACAUUUU -....-----.......................((((((((.((((...((.((((((((......)))).)))))).(((((....))))).......)))).))))))))... ( -26.30) >consensus _CAUA__C__CAUUUUC___UAUACCUACAUUCAUGUGCAUAUUGAGAGCCACAAUUCGAUCAUUUUGGGUAUAGGGAGCCGAGGCAUCAGCAUCGAAAUCAAAGUGCACAUUUU .................................((((((((.(((((..((...((((((.....))))))....))..)(((.((....)).)))...)))).))))))))... (-20.31 = -19.48 + -0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:40 2006