| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,705,809 – 7,705,899 |
| Length | 90 |
| Max. P | 0.886186 |
| Location | 7,705,809 – 7,705,899 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 65.69 |
| Mean single sequence MFE | -43.13 |
| Consensus MFE | -11.46 |
| Energy contribution | -11.80 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.27 |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.886186 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7705809 90 - 23771897 ------------GCUUUU------------------GGCCACGGCCAAGAUCUUCGAUCGCUGUGAGUUGGCCAAUUUGCUGCAGCACCGUUUUGGGCUUCCUGCCGCCCAAGUGGCCAC ------------.....(------------------(((((((((((.((((...))))((.....)))))))....(((....))).....((((((........))))))))))))). ( -35.20) >DroPse_CAF1 1798 120 - 1 CUUUCUCCUUCUGCUCUUCGCCUGCCCCUUGGGGCGGGUGUCGGGCAAGAUCUUCGAUCGCUGCGAGCUAGCCAAGCUCCUGCAGCAUCGUUUCGGACUACCCUCUGCCCAGGUGGCGAC .....(((...(((((..(((((((((....)))))))))..))))).((....((((.((((((((((.....)))))..)))))))))..)))))(((((.........))))).... ( -53.20) >DroSec_CAF1 2654 90 - 1 ------------GCUUUU------------------GGCCACGGCCAAGAUCUUCGAUCGCUGUGAGUUGGCCAAUUUGCUGCAGCACCGUUUUGGGCUUCCUGCCGCCCAAGUGGCCAC ------------.....(------------------(((((((((((.((((...))))((.....)))))))....(((....))).....((((((........))))))))))))). ( -35.20) >DroMoj_CAF1 6940 95 - 1 ----------CCGCUGCA---------------GCAGAGCUCGGCCAGAGUCUUCGAGCGCUGCGAGCUGGCUGCCCUGCUGCAGCAGCGAUACGGAAUGCCCGCCGCCCAGGCCGCCAC ----------..((((((---------------((((.((..((((((....((((.......)))))))))))).)))))))))).(((....((.....))(((.....))))))... ( -43.50) >DroAna_CAF1 6608 90 - 1 ------------GGUUUU------------------GGCCUCCGCCAAGAUCUUUGAUCGCUGUGAGCUGGCCCAUCUCCUCCAGCAUCGCUUCGGUCUGCCGGCCCCGCAAGUGGCCAC ------------((((((------------------(((....)))))))))...(((((..(((((((((..........))))).))))..)))))....((((.(....).)))).. ( -40.20) >DroPer_CAF1 3125 120 - 1 CUUCCUCCUUCUGCUCGUCGUCUGCCCCUUGGGGCGGGUGUCGGGCAAGGUCUUCGAUCGAUGCGAGCUAGCCAAGCUCCUGCAGCAUCGUUUCGGACUACCCUCUGCCCAGGUGGCGAC ...((.(((.......(.(..((((((....))))))..).)((((((((..(((((.(((((((((((.....))))).....))))))..)))))....))).)))))))).)).... ( -51.50) >consensus ____________GCUUUU__________________GGCCUCGGCCAAGAUCUUCGAUCGCUGCGAGCUGGCCAAUCUCCUGCAGCAUCGUUUCGGACUACCCGCCGCCCAAGUGGCCAC ..........................................((....((((...))))(((((.((............)))))))...............))(((((....)))))... (-11.46 = -11.80 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:39 2006