Locus 2741

Sequence ID 3L_DroMel_CAF1
Location 7,701,814 – 7,701,930
Length 116
Max. P 0.939383
window4288

overview

Window 8

Location 7,701,814 – 7,701,930
Length 116
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 90.99
Mean single sequence MFE -26.50
Consensus MFE -20.74
Energy contribution -22.22
Covariance contribution 1.48
Combinations/Pair 1.06
Mean z-score -2.16
Structure conservation index 0.78
SVM decision value 1.28
SVM RNA-class probability 0.939383
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7701814 116 + 23771897
UACA----AUUCUCGAAACUGUCACACUAAUGGAAAUCCCAUUAGUUUUUGUUCCAAUUCAGGUAUACAUCAAAGGCACUUUUUGGCCUACUUGUAGUGUUCCUAUUUUGACCAAAGUCG
....----.....(((....((((.((((((((.....))))))))..............(((.((((..(((((((.(.....)))))..)))..)))).)))....)))).....))) ( -25.30)
>DroSec_CAF1 63906 116 + 1
UACA----AGUCUCGAAAGUGUCACACUAAUGGAAAUCCCAUUAGUUCUUGUUCCAAUUCAGGUAUACAUCAAAGGCACUUUUUGGCCUACUUGUAGUGUUUCUAUUUUGACCAAAGUCG
((((----(((((.(((((((((..((((((((.....))))))))...(((.((......))...))).....))))))))).))...))))))).............(((....))). ( -31.10)
>DroSim_CAF1 76674 116 + 1
UACA----AGUCUCGAAAGUGUCACACUAAUGGAUAUCCCAUUAGUUCUUGUUCCAAUUCAGGUAUACAUCAAAGGCACUUUUUGGCCUACUUGUAGUGUUUCUAUUUUGACCAAAGUCG
((((----(((((.(((((((((..((((((((.....))))))))...(((.((......))...))).....))))))))).))...))))))).............(((....))). ( -31.10)
>DroEre_CAF1 76382 118 + 1
UACAUUUUA--CUCGAAAGUGUCACACUAAUGGAAAUGCCAUUAAUUUUUGUUCCAAUUUAGGUAUACAUCAAAGGCACUUUUUUGCCUACUUGUAGUGUUUCUUUUUUGACCAAAUUCA
.........--.(((((((.(..((((((((((.....)))))).....................((((....(((((......)))))...))))))))..).)))))))......... ( -22.00)
>DroYak_CAF1 79042 120 + 1
UAUAUACAAGUCUCAAAAGUGUCACACUAAUGGAAAUGCCAUUAAUUUUUGUUCCAAUUCAGGUAUACAUCAAAGGCACUUUUUGACCUACUGGUAGUGUUUCUCUUUUGACCAAAGUCG
...((((.......(((((((((....((((((.....)))))).....(((.((......))...))).....)))))))))..(((....))).)))).........(((....))). ( -23.00)
>consensus
UACA____AGUCUCGAAAGUGUCACACUAAUGGAAAUCCCAUUAGUUUUUGUUCCAAUUCAGGUAUACAUCAAAGGCACUUUUUGGCCUACUUGUAGUGUUUCUAUUUUGACCAAAGUCG
((((....((.((.(((((((((..((((((((.....))))))))...(((.((......))...))).....))))))))).)).))...)))).............(((....))). (-20.74 = -22.22 +   1.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:38 2006