Locus 2740

Sequence ID 3L_DroMel_CAF1
Location 7,697,522 – 7,697,639
Length 117
Max. P 0.919594
window4287

overview

Window 7

Location 7,697,522 – 7,697,639
Length 117
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 75.94
Mean single sequence MFE -34.27
Consensus MFE -14.72
Energy contribution -14.50
Covariance contribution -0.22
Combinations/Pair 1.33
Mean z-score -2.41
Structure conservation index 0.43
SVM decision value 1.13
SVM RNA-class probability 0.919594
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7697522 117 - 23771897
AGAAACAAAUGCGUAAACUAACCCUCUCCCGCUCCUCCAGCAUGAGUAGCAACCAUAGCAGCUCAGCAACUUCUAGUAGAAAAAAGCAUCAAGCCACUCUAUUGGACAGCGGGUUCA
...........................((((((......((.(((((.((.......)).)))))))....(((((((((.....((.....))...))))))))).)))))).... ( -29.90)
>DroVir_CAF1 84829 114 - 1
AGAAACAAAUGCGUAAGCUUACGCUCUCGCGCUCUUCCAGCAUGAACAGCAAUCACAGUGGC--AGCAACUCC-AGACAAACCAAGCAGCAAACAUCGCUGCUGGACAGCGGUUUCU
((((((....(((((....)))))...((((((.(((......))).)))........(((.--((...))))-)......(((.(((((.......))))))))...))))))))) ( -31.70)
>DroPse_CAF1 77078 114 - 1
AGAAGCAGAUGAGAAAGCUCACGCUGUCACGCUCCUCCAGCAUGAACAGCAACCACAGCAGCUCCAGCAC--C-CGCAGGGUAAAGCAACAGACCACGCUGCUGGACAGCGGCUUCA
.(((((...((((....))))(((((((..(((..((......))..))).....(((((((....((..--.-.))..(((..........)))..))))))))))))))))))). ( -43.00)
>DroYak_CAF1 73917 117 - 1
AGAAACAAAUGCGUAAACUUACCCUUUCCCGCUCCUCCAGCAUGAGCAGCAACCAUAGCAGUUCCGCUGCGCCAAGUAGGAAAAAGCAUCAAGCCACUUUGUUGGACAGUGGUUUCA
.(((((..(((((((....)))..(((((..((...(((((..((((.((.......)).)))).)))).)...))..)))))..))))((..(((......)))....))))))). ( -28.20)
>DroAna_CAF1 66921 117 - 1
AAAAGCAGAUGCGGAAGCUGACCCUCUCACGCUCCUCCAGCAUGAGCAGCAAUCACAGUAACUCUGACGCUCCUGCAAGAAAAAAUCAUCAGUCCACUCUCAUGGACAGUGGCUUCA
....((((..(((...((((.....((((.(((.....))).)))))))).....(((.....))).)))..))))..(((....((((..(((((......))))).)))).))). ( -32.20)
>DroPer_CAF1 94470 114 - 1
AGAAGCAGAUGAGAAAGCUCACGCUGUCACGCUCCUCCAGCAUGAACAGCAACCACAGCAGCUCCGGCAC--C-CGCAGGGUAAAGCAACAGACCACGCUGCUGGACAGCGGCUUUA
.(((((...((((....))))(((((((..(((..((......))..))).....(((((((.((.((..--.-.)).))((......)).......))))))))))))))))))). ( -40.60)
>consensus
AGAAACAAAUGCGUAAGCUCACCCUCUCACGCUCCUCCAGCAUGAACAGCAACCACAGCAGCUCCGCCACUCC_AGAAGAAAAAAGCAUCAAACCACGCUGCUGGACAGCGGCUUCA
.(((((......(....)...........((((..(((((((......((.......))................((........))............))))))).))))))))). (-14.72 = -14.50 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:37 2006