Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 7,693,816 – 7,693,914 |
Length | 98 |
Max. P | 0.584621 |
Location | 7,693,816 – 7,693,914 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 79.56 |
Mean single sequence MFE | -15.69 |
Consensus MFE | -10.22 |
Energy contribution | -10.38 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.12 |
Mean z-score | -1.63 |
Structure conservation index | 0.65 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.584621 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7693816 98 - 23771897 CAACAAC-------AAAGUUGACCGCGAAUUAAUCUUAACUACAAGCAACAAAUAAAAUGGGCCAACUACGUAUGUAUUUAAUUAAUACAAC---AUCAUGAUCAUAG .......-------..(((((.((((...................))..((.......)))).)))))..((.((((((.....))))))))---............. ( -10.61) >DroSec_CAF1 55086 101 - 1 CAACAAC-------AAAGUUGACCGUGAAGUAAUCUCAACGCCAAGCAACAAAUAAAAUGGGUCAACUACGUAUGUAUUUCAUUAAUACAACAAUAACAUGAUCAUAG .......-------..((((((((((..((....))..))((...)).............))))))))..((.((((((.....))))))))................ ( -17.50) >DroSim_CAF1 68154 101 - 1 CAACAAC-------AAAGUUGACCGUGAAGUAAUCUCAACGACAAGCAACAAAUAAAAUGGGUCAACUGCGUAUGUAUUUAAUUAAUACAACAACAUCAUGAUCAUAG .....((-------..((((((((((..((....))..)).........((.......))))))))))..)).((((((.....)))))).................. ( -16.30) >DroEre_CAF1 68122 105 - 1 --AAAACUAAAACAAAAGUUGAUCUUGAAGUAAUCUUAGCGAUCAGCCACA-AUAAAAGGGGUCAACUUAGUAUGUACUUAAUAAGUACAACAUUAUUAUCAACAUAU --.............(((((((((((.(((....))).((.....))....-......))))))))))).((((((...((((((........))))))...)))))) ( -19.20) >DroYak_CAF1 70150 105 - 1 UAACAACC--CACUAAAGUUGACCAUGAAGUAAUCUCAACGCUCAGCCACA-AUAAAUUGGACCAACUACGUGUGUAUUUAAUUAAUACAACAUCAUUAUCAGCAUAG ........--.......(((((..((((.((.......(((.....(((..-......)))........))).((((((.....)))))))).))))..))))).... ( -14.82) >consensus CAACAAC_______AAAGUUGACCGUGAAGUAAUCUCAACGACAAGCAACAAAUAAAAUGGGUCAACUACGUAUGUAUUUAAUUAAUACAACAACAUCAUGAUCAUAG ................((((((((....................................))))))))..((.((((((.....))))))))................ (-10.22 = -10.38 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:36 2006