Locus 2738

Sequence ID 3L_DroMel_CAF1
Location 7,693,488 – 7,693,578
Length 90
Max. P 0.763237
window4285

overview

Window 5

Location 7,693,488 – 7,693,578
Length 90
Sequences 3
Columns 99
Reading direction forward
Mean pairwise identity 79.66
Mean single sequence MFE -21.97
Consensus MFE -16.37
Energy contribution -16.37
Covariance contribution 0.00
Combinations/Pair 1.09
Mean z-score -1.64
Structure conservation index 0.75
SVM decision value 0.51
SVM RNA-class probability 0.763237
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7693488 90 + 23771897
UCACGCUAGUGACGACAGCAACUGUUGAUCGUA---------GGAUCAUACAUACAUAUACAUAUGUACCUACCAACAAACAUAUAUUCGAGUGGGUUC
(((((((.((....)))))...(((((...(((---------((....((((((........)))))))))))))))).............)))).... ( -18.30)
>DroSim_CAF1 67819 93 + 1
UCGCACUAGUGACGACAGCAACUGUUGAUCGUACGCGAUUUGGGAUCGUACAUAU------AUAUGUACCUACCUACAAACAUAUAUUCAAGUGGGUUC
.(.((((.(((((((((((....)))).)))).)))....((((...((((((..------..))))))...))))..............)))).)... ( -24.30)
>DroEre_CAF1 67832 92 + 1
UCACGCUAGUGACGACAGCAACUGUUGAUCGUCCGCGAU-UAAGUUUAUACAUAU------GUAUGUACCUACAAUCAUACAUAUAUUCGAGUGGGUUC
...((((.(.(((((((((....)))).)))))).(((.-...((....))((((------(((((..........)))))))))..)))))))..... ( -23.30)
>consensus
UCACGCUAGUGACGACAGCAACUGUUGAUCGUACGCGAU_U_GGAUCAUACAUAU______AUAUGUACCUACCAACAAACAUAUAUUCGAGUGGGUUC
.(((....)))((((((((....)))).))))................(((((((......)))))))(((((..................)))))... (-16.37 = -16.37 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:35 2006