Locus 2737

Sequence ID 3L_DroMel_CAF1
Location 7,679,505 – 7,679,604
Length 99
Max. P 0.750598
window4284

overview

Window 4

Location 7,679,505 – 7,679,604
Length 99
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 78.53
Mean single sequence MFE -24.38
Consensus MFE -11.48
Energy contribution -12.01
Covariance contribution 0.53
Combinations/Pair 1.16
Mean z-score -2.28
Structure conservation index 0.47
SVM decision value 0.47
SVM RNA-class probability 0.750598
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7679505 99 - 23771897
CGCAAAAUAAGCGUCAAUCAUGUGCCCAAGAAGAAGCGCUUCUCGCUCAUUUGGUAAAUCA----------ACCAGGGCA--UUCAUAUUCUACGCUUAAAC---GGAAAAAUA
.......(((((((.......((((((..(((..((((.....))))..)))(((......----------))).)))))--).........)))))))...---......... ( -25.69)
>DroPse_CAF1 57932 101 - 1
CGAAAGAUUAGCGUCAAUCAUGUGCCCAAGAAGAAGCGCUUCUCGCUCAUCUGGUAAAUCA----------C--AGAACAAAACCA-AAACCAGGCCAAAACCAGGGCGAAAUA
(....)...(((((...((.((....)).))....)))))..((((((.((((........----------)--))).........-......((......)).)))))).... ( -20.00)
>DroSec_CAF1 40886 99 - 1
CGUAAAAUAAGCGUCAAUCAUGUGCCCAAGAAGAAGCGCUUCUCGCUCAUCUGGUAAAUCA----------GCCAGGGCA--AUCAUAUUCUACGCUUAAAC---GGAAAAAUA
(((....(((((((..(..((((((((.(((.((.(((.....))))).)))(((......----------))).)))))--..)))..)..))))))).))---)........ ( -27.00)
>DroSim_CAF1 53899 99 - 1
CGUAAAAUAAGCGUCAAUCAUGUGCCCAAGAAGAAGCGCUUCUCGCUCAUCUGGUAAAUCA----------GCCAGGGCA--UUCAUAUUCUACGCUUAAAC---GGAAAAAUA
(((....(((((((.......((((((.(((.((.(((.....))))).)))(((......----------))).)))))--).........))))))).))---)........ ( -27.49)
>DroYak_CAF1 55584 87 - 1
CGCAAAAUAAGCGUCAAUCAUGUGCCCAAGAAGAAGCGCUUCUCGCUCAUCUGGUAAAUCA----------ACCGGGGCA--GUCAU----------UGAG-----ACAAAAAA
(((.......)))(((((.((.(((((.(((.((.(((.....))))).)))(((......----------))).)))))--)).))----------))).-----........ ( -22.30)
>DroAna_CAF1 48282 107 - 1
CGCAAGAUUAGCGUCAAUCAUGUGCCCAAGAAGAAGCGCUUCUCGCUCAUCUGGUAAACCAGAAACAAGCCACCAGGGCA--GUUAUCUAAUAUCUAUAAUC---CGAAAA-U-
.(((.((((......)))).)))((((.(((((.....))))).(((..(((((....)))))....))).....)))).--....................---......-.- ( -23.80)
>consensus
CGCAAAAUAAGCGUCAAUCAUGUGCCCAAGAAGAAGCGCUUCUCGCUCAUCUGGUAAAUCA__________ACCAGGGCA__AUCAUAUUCUACGCUUAAAC___GGAAAAAUA
(((.......))).........(((((.(((.((.(((.....))))).)))(((................))).))))).................................. (-11.48 = -12.01 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:34 2006