Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 7,675,918 – 7,676,015 |
Length | 97 |
Max. P | 0.972321 |
Location | 7,675,918 – 7,676,015 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 90.92 |
Mean single sequence MFE | -21.40 |
Consensus MFE | -19.18 |
Energy contribution | -20.57 |
Covariance contribution | 1.39 |
Combinations/Pair | 1.05 |
Mean z-score | -2.02 |
Structure conservation index | 0.90 |
SVM decision value | 1.69 |
SVM RNA-class probability | 0.972321 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7675918 97 + 23771897 ACAGAGAGAAAGAGAAGGCGGCAAAGACGUUUGCAUGACAAGCUUAAGGUUCGAAAAAGUAAAUUGGAAAGUUUGCUUACUUCAA-AAACUAAGCCGC .................(((((......(((((.....)))))....((((.(((.(((((((((....)))))))))..)))..-.))))..))))) ( -22.40) >DroGri_CAF1 64977 88 + 1 ----------AGAGAACGCAGCAAAUAUGUUUGUUGGACAAGCUUAAAGUUCUUAAAAGUGAAUUGGAAAGUUAGCUUACUUCAAAAAAAGAAGCUGC ----------.......(((((......(((((.....))))).............((((.((((....)))).))))...............))))) ( -16.70) >DroSec_CAF1 37309 97 + 1 ACAGAGAGAAAGAGAAGGCGGCAAAGACGUUUGCAUGACAAGCUUAAGGUUCGAAAAAGUAAAUUGGAAAGUUUGCUUACUUCAA-AAACUAAGCCGC .................(((((......(((((.....)))))....((((.(((.(((((((((....)))))))))..)))..-.))))..))))) ( -22.40) >DroSim_CAF1 50319 97 + 1 ACAGAGAGAAAGAGAAGGCGGCAAAGACGUUUGCAUGACAAGCUUAAGGUUCGAAAAAGUAAAUUGGAAAGUUUGCUUACUUCAA-AAACUAAGCCGC .................(((((......(((((.....)))))....((((.(((.(((((((((....)))))))))..)))..-.))))..))))) ( -22.40) >DroEre_CAF1 50399 97 + 1 ACAGAGAGAAAGAGAAGGCGGCAAAGACGUUUGCAUGACAAGCUUAAGGUUCGAAAAAGUAAAUUGGAAAGUUUGCUUACUUCAA-AAACUAAGCCGC .................(((((......(((((.....)))))....((((.(((.(((((((((....)))))))))..)))..-.))))..))))) ( -22.40) >DroYak_CAF1 51954 98 + 1 ACAGAGAGAAAGAGAAGGCGGCAAAGACGUUUGCAUGACAAGCUUAAGGUUCGAAAAAGUAAAUUGGAAAGUUUGCUUACUUCAAAAAACUAAGCCGC .................(((((......(((((.....))))).........(((.(((((((((....)))))))))..)))..........))))) ( -22.10) >consensus ACAGAGAGAAAGAGAAGGCGGCAAAGACGUUUGCAUGACAAGCUUAAGGUUCGAAAAAGUAAAUUGGAAAGUUUGCUUACUUCAA_AAACUAAGCCGC .................(((((......(((((.....))))).............(((((((((....)))))))))...............))))) (-19.18 = -20.57 + 1.39)
Location | 7,675,918 – 7,676,015 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 90.92 |
Mean single sequence MFE | -16.20 |
Consensus MFE | -14.98 |
Energy contribution | -15.03 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.05 |
Mean z-score | -1.15 |
Structure conservation index | 0.92 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.655311 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7675918 97 - 23771897 GCGGCUUAGUUU-UUGAAGUAAGCAAACUUUCCAAUUUACUUUUUCGAACCUUAAGCUUGUCAUGCAAACGUCUUUGCCGCCUUCUCUUUCUCUCUGU (((((((((..(-((((((.(((.(((........))).))))))))))..)))))).......(((((....))))))))................. ( -16.80) >DroGri_CAF1 64977 88 - 1 GCAGCUUCUUUUUUUGAAGUAAGCUAACUUUCCAAUUCACUUUUAAGAACUUUAAGCUUGUCCAACAAACAUAUUUGCUGCGUUCUCU---------- (((((.......((((..(((((((((..(((..............)))..)).)))))).)...)))).......))))).......---------- ( -13.28) >DroSec_CAF1 37309 97 - 1 GCGGCUUAGUUU-UUGAAGUAAGCAAACUUUCCAAUUUACUUUUUCGAACCUUAAGCUUGUCAUGCAAACGUCUUUGCCGCCUUCUCUUUCUCUCUGU (((((((((..(-((((((.(((.(((........))).))))))))))..)))))).......(((((....))))))))................. ( -16.80) >DroSim_CAF1 50319 97 - 1 GCGGCUUAGUUU-UUGAAGUAAGCAAACUUUCCAAUUUACUUUUUCGAACCUUAAGCUUGUCAUGCAAACGUCUUUGCCGCCUUCUCUUUCUCUCUGU (((((((((..(-((((((.(((.(((........))).))))))))))..)))))).......(((((....))))))))................. ( -16.80) >DroEre_CAF1 50399 97 - 1 GCGGCUUAGUUU-UUGAAGUAAGCAAACUUUCCAAUUUACUUUUUCGAACCUUAAGCUUGUCAUGCAAACGUCUUUGCCGCCUUCUCUUUCUCUCUGU (((((((((..(-((((((.(((.(((........))).))))))))))..)))))).......(((((....))))))))................. ( -16.80) >DroYak_CAF1 51954 98 - 1 GCGGCUUAGUUUUUUGAAGUAAGCAAACUUUCCAAUUUACUUUUUCGAACCUUAAGCUUGUCAUGCAAACGUCUUUGCCGCCUUCUCUUUCUCUCUGU (((((..((...((((..((((((.....(((.((........)).)))......))))).)...))))...))..)))))................. ( -16.70) >consensus GCGGCUUAGUUU_UUGAAGUAAGCAAACUUUCCAAUUUACUUUUUCGAACCUUAAGCUUGUCAUGCAAACGUCUUUGCCGCCUUCUCUUUCUCUCUGU (((((...((((...((((((((............))))))))...)))).....(.(((.....))).)......)))))................. (-14.98 = -15.03 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:31 2006