Locus 2733

Sequence ID 3L_DroMel_CAF1
Location 7,667,623 – 7,667,715
Length 92
Max. P 0.500000
window4278

overview

Window 8

Location 7,667,623 – 7,667,715
Length 92
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 78.13
Mean single sequence MFE -11.65
Consensus MFE -9.10
Energy contribution -9.27
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -0.81
Structure conservation index 0.78
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7667623 92 - 23771897
CCGAUAUUCAGAAAUU---GUACUCACAAGACACUACCUCAUUUACAGAAAUGAGUACAAGUAGUCAAACACCGAAGAUG------ACAACA------ACGACGACC
.((...........((---(((((((.........................)))))))))((.((((...........))------)).)).------.))...... ( -12.71)
>DroVir_CAF1 57542 101 - 1
CUAAUAUCCAGAAACC---AUACUUACCAGACACUACCUCAUUUACAGAAAUGAGUGCAAGUAGUCCAACUCCGAAACCGAAG---ACAACGACCACAACAACGACC
................---..........((((((.((((((((....))))))).)..))).)))...((.((....)).))---..................... ( -10.20)
>DroGri_CAF1 55839 98 - 1
CCAAUAUCCCGAAACC---AUACUCACAAGACACUACCUCAUUUACAGAAAUGAGUACAAGUAGUCCAACUGCGAAGACA------ACAACGACCACAACAACGACU
.........((.....---..................(((((((....))))))).....((((.....)))).......------....))............... ( -10.00)
>DroWil_CAF1 68911 95 - 1
CCGAAGUCCCGAUAUCACAAUACUCACAAGACACUACCUCAUUUCCAGAAAUGAGUACAAGUAGUCAAACUGCGAAGACG------AUAACG------ACUACCACA
....((((....((((.............((((((..(((((((....)))))))....))).)))...((....))..)------)))..)------)))...... ( -15.70)
>DroMoj_CAF1 33587 104 - 1
CCACUAUACAGAAACC---AUACUCACAAGACACUACCUCAUUUACAGAAAUGAGUGCAAGUAGUCCAACUCCGAAGACAACGACCACAACAACAACAACGACGACU
................---..........((((((.((((((((....))))))).)..))).)))......................................... (  -9.30)
>DroAna_CAF1 36331 91 - 1
CCGAUAACCACAACAU---GUACUCACAAGACACUACCUCAUUUCCAGAAAUGAGUACA-GUAGUCAAACCCCGAAGAUG------ACAACU------ACGACGACC
.((.............---..........((((((..(((((((....)))))))...)-)).)))......((.((...------....))------.)).))... ( -12.00)
>consensus
CCAAUAUCCAGAAACC___AUACUCACAAGACACUACCUCAUUUACAGAAAUGAGUACAAGUAGUCAAACUCCGAAGACG______ACAACG______ACGACGACC
.............................((((((..(((((((....)))))))....))).)))......................................... ( -9.10 =  -9.27 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:28 2006