| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,650,165 – 7,650,273 |
| Length | 108 |
| Max. P | 0.590902 |
| Location | 7,650,165 – 7,650,273 |
|---|---|
| Length | 108 |
| Sequences | 3 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 63.01 |
| Mean single sequence MFE | -29.07 |
| Consensus MFE | -13.89 |
| Energy contribution | -17.57 |
| Covariance contribution | 3.68 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.590902 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7650165 108 + 23771897 UGUCGUCUGGUUUAGCUAGGACCUUUUCGUCUUUCUUCUCAGGCGACU---UUGGU--------UUUUCCUCAGGAUGGAGAGGAGAUUUAUCCCCACCAAAUGUAACACCAGUUACCA .(((((((((...((..(((((......))))).))..)))))))))(---(((((--------.(((((.......)))))(((......)))..)))))).(((((....))))).. ( -32.50) >DroSim_CAF1 37722 108 + 1 UGUCGUCUGGUUUAGCUAGGACCUUUUCGUCUUUCUUCUCAGGCGACU---UUGGU--------UUUUCCUCAGAAUGGAGAGGAGACAUAACCCCACCACCUGUAACACCAGUUACCA .(((((((((...((..(((((......))))).))..))))))))).---..(((--------((((((((........)))))))...)))).........(((((....))))).. ( -32.00) >DroWil_CAF1 52305 111 + 1 UGUCUUCUGCUUUAACUGGAGCUUUUUCUUCUCUUAGUUCAG-UAACUGUGCUGGUAAUAAGCGUUUGCUUUGUGUCGA-----ACACUUGAC--UAGUCGUUGUGACAUCUGUGGUUG ((((..(((..((((..((((......))))..))))..)))-((((...((((((..((((.((((((.....).)))-----)).))))))--)))).)))).)))).......... ( -22.70) >consensus UGUCGUCUGGUUUAGCUAGGACCUUUUCGUCUUUCUUCUCAGGCGACU___UUGGU________UUUUCCUCAGGAUGGAGAGGAGACUUAACCCCACCAAAUGUAACACCAGUUACCA .(((((((((...((..(((((......))))).))..)))))))))....(((((.........(((((((........))))))).........)))))..(((((....))))).. (-13.89 = -17.57 + 3.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:27 2006