| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,641,146 – 7,641,242 |
| Length | 96 |
| Max. P | 0.599606 |
| Location | 7,641,146 – 7,641,242 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 78.70 |
| Mean single sequence MFE | -25.55 |
| Consensus MFE | -11.97 |
| Energy contribution | -11.53 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.47 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.599606 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7641146 96 + 23771897 --GUCUUCUUCAGAAG---------------C---UUGUUGUCGGUUUCUAUGGAAGUUUUGGAGACAAGUUUCUUGGCUGAAUUAGCUGAUUGUGUCUUCAUGCUUUUGGUUGCU --..(((((..(((((---------------(---(.......)))))))..)))))...((((((((......(..((((...))))..)...)))))))).((........)). ( -25.70) >DroVir_CAF1 33841 96 + 1 --GUUUUUUUCUGUAG---------------C---UUGUUAUCAGAUUCUAUGGAAGUUUUGUAGGCAAUUGAUUUAGUUGCAGUAGCUGAUUGUGUCCUCAUGCUUUUAGUUAUU --........((((((---------------(---(....(((((..((((..((...))..))))...)))))..))))))))(((((((..((((....))))..))))))).. ( -22.70) >DroPse_CAF1 33687 113 + 1 GGGCCUUCUUCUGAAGGCUGGCCACCGCAUGC---CUGUUGUCGGUUUCUAUGGAAGUUCUGUGGGCAAUGGUCUUGGUUGAAUUAGCUGAUUGUGUCUUCAUACUUUUGGUUGCU .(((((((....)))))))((((((((((...---....)).)))).(((((((.....)))))))....))))..........((((..(..((((....))))..)..)))).. ( -32.80) >DroGri_CAF1 27896 96 + 1 --GUUUUUUUCUGUAG---------------C---UUGUUGUCAGUGUCUAUGGAAGUUCUGUAGGCAAUGGAUUUAGUUGCAAUUGCUGAUUGUGUCUUCAUGCUUUUAGUUAUU --.........(((((---------------(---(....(((..(((((((((.....)))))))))...)))..)))))))...(((((..((((....))))..))))).... ( -25.10) >DroMoj_CAF1 24894 99 + 1 --GUUUUCUUCUGUAG---------------AUUUUUGUUAUCAGAUUCUAUGGAAGUUCUGUAGGCAAUGGAUUUGGUUGCAUUAGCUGAUUGUGUCUUCAUGCUUUUAGUUAUU --.....(((((((((---------------(..((((....)))).))))))))))...(((((.(((.....))).))))).(((((((..((((....))))..))))))).. ( -25.30) >DroAna_CAF1 26704 96 + 1 --GAUUUUUUCAGAAG---------------C---UUGUUGUCGGUUUCUAUGGAAGUUCUGUAGGCAAGUGUCUUGGAUGCAAUAACUGAUUGUGUCUUCAUGCUUUUAGUUGCU --(((((((..(((((---------------(---(.......)))))))..)))))))(((.(((((..((....(((((((((.....))))))))).))))))).)))..... ( -21.70) >consensus __GUUUUCUUCUGAAG_______________C___UUGUUGUCAGUUUCUAUGGAAGUUCUGUAGGCAAUGGACUUGGUUGCAUUAGCUGAUUGUGUCUUCAUGCUUUUAGUUACU ...................................................(((((((..((.(((((......(((((((...)))))))...))))).)).)))))))...... (-11.97 = -11.53 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:24 2006