Locus 273

Sequence ID 3L_DroMel_CAF1
Location 776,592 – 776,696
Length 104
Max. P 0.627516
window407

overview

Window 7

Location 776,592 – 776,696
Length 104
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 80.76
Mean single sequence MFE -20.09
Consensus MFE -10.72
Energy contribution -11.55
Covariance contribution 0.83
Combinations/Pair 1.06
Mean z-score -2.19
Structure conservation index 0.53
SVM decision value 0.19
SVM RNA-class probability 0.627516
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 776592 104 + 23771897
AUGCCGUAGAAGUGCAUUUUGUGGCAUGUGUCGUUUAAUUAUGCUAAAAGCUAGCAACAACAAAGGGCCACACCAACAAAGGCAACAAAAACAAGUCAAACAAA-
.(((((((....)))....((((((...(((.((.......(((((.....))))))).)))....))))))........))))....................- ( -22.51)
>DroVir_CAF1 153569 84 + 1
AAGCCUUAGAAGUGCAUUUUGUGGCAUGUGUCGUUUAAUUAUGCUAAAAGCUAACAGCAACAA-------------------CAACG--AACAAGUCAAACAAAU
..((((....)).))..((((((((.(((.(((((......((((..........))))....-------------------.))))--)))).)))..))))). ( -13.80)
>DroEre_CAF1 139267 104 + 1
AUGCCGUAGAAGUGCAUUUUGUGGCAUGUGUCGUUUAAUUAUGCUAAAAGCUAGCAACAACAAAGCCGCUCGCCAACAAAGGCAACAAAAACAAGUCAAACAAA-
.(((((((....)))..((((((((..(((..((((.....(((((.....)))))......)))))))..))).)))))))))....................- ( -22.00)
>DroWil_CAF1 149002 84 + 1
AACCCAUAGAAGUGCAUUUUGUGGCAUGUGUCGUUUAAUUAUGCUAAAAGCUAACAACACAA---------------------AACAAUAACAAGUCAAACAAAU
...((((((((.....))))))))..(((((.(((.......((.....)).))).))))).---------------------...................... ( -12.90)
>DroYak_CAF1 138770 104 + 1
AUGCCGUAGAAGUGCAUUUUGUGGCAUGUGUCGUUUAAUUAUGCUAAAAGCUAGCAACAACAAAGGCGCACACCAACAAAGGCAACAAAAACAAGUCAAACAAA-
.(((((((....)))..(((((((..((((((.........(((((.....)))))........))))))..)).)))))))))....................- ( -24.03)
>DroAna_CAF1 152057 90 + 1
AUGCCAUAGAAGUGCAUUUUGUGGCAUGUGUCGUUUAAUUAUGCUAAAAGCUAGCAACAAAA--------------CAGACACAGGACAAACAAGACAAACAAA-
.((((((((((.....))))))))))((((((((((.....(((((.....)))))...)))--------------).))))))....................- ( -25.30)
>consensus
AUGCCGUAGAAGUGCAUUUUGUGGCAUGUGUCGUUUAAUUAUGCUAAAAGCUAGCAACAACAA_____________CAAAGGCAACAAAAACAAGUCAAACAAA_
(((((((((((.....)))))))))))..............(((((.....)))))................................................. (-10.72 = -11.55 +   0.83)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:59 2006