| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,639,623 – 7,639,731 |
| Length | 108 |
| Max. P | 0.500000 |
| Location | 7,639,623 – 7,639,731 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 78.54 |
| Mean single sequence MFE | -35.67 |
| Consensus MFE | -25.11 |
| Energy contribution | -25.45 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.70 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7639623 108 - 23771897 GGCGGCGGGGGCGUUACCGAUGUCGAAGAUUUUGACAGUCAAUUGGAGAUACUAAAACCAAGCUCCCGUCGAAGUUCAUGUAACUCCUCCCUGAAGCCUAAAGCC----CAU ((((((((((((......((((((((.....)))))).))..((((...........)))))))))))))(.((((.....)))).)........))).......----... ( -31.70) >DroSec_CAF1 24690 108 - 1 GGCGGCGGGGGCGUAACCGAUGUCGAAGAUUUCGACAGCCAGGUGGAGGUACUAAAACCAAGCUCCCGCCGCAAUUCUUGUAACUCCUCUCUGAAGCCCAAAGCU----CAU .(((((((((((...(((..((((((.....))))))....)))...(((......)))..)))))))))))...................(((.((.....)))----)). ( -42.50) >DroEre_CAF1 28277 108 - 1 GGCGGCGGGGGCGUGACCGACGUCGAAGAUUUUGACAGUCAGGUGGAGGUGCUAAAACCAAGCUCCCGUCGAAAUUCUUGUAACUCCUCCCUGAAGCCCAAAGCU----CAU ((((((((((((.(.(((((((((((.....))))).))).))).).(((......)))..)))))))))....(((...............)))))).......----... ( -36.66) >DroYak_CAF1 25579 108 - 1 GGCGGCGGGGGCGUAACCGAUGUCGAAGAUUUCGACAGUCAGGUGGAGGUACUAAAGCCAAGCUCCCGUCGAAAUUCUUGUAAAUCCUCCCUGAAGCCCAAAGCU----CAU ((((((((((((...(((..((((((.....))))))....)))...(((......)))..)))))))))....(((...............)))))).......----... ( -36.56) >DroAna_CAF1 25158 102 - 1 GGCGCCGGCGGCGUGACCGAUGUGGAAGAUUUUGACAGUCAGGCGGAGGUUUUGAAGCCCAACUCCCGGCGUGGCUCGGG------AUCCGUAAAACUAAAAGCC----GAA .....((((.((.((((...(((.((.....)).))))))).))(((((((....))))....(((((((...)).))))------))))............)))----).. ( -32.20) >DroPer_CAF1 33971 108 - 1 GGCGCAGGCGGCGUAACCGAUGUCGAGGAUUUCGACAGUCAGGCAGAGGUCCUAAAGCCCAGCUCCCGACGUGGUUCC-GCAAAUGC--CCUAAAC-CCCAAGCCAAAACAG ((.(((.((((...((((.((((((((((((((..(......)..))))))))..(((...)))..))))))))))))-))...)))--)).....-............... ( -34.40) >consensus GGCGGCGGGGGCGUAACCGAUGUCGAAGAUUUCGACAGUCAGGUGGAGGUACUAAAACCAAGCUCCCGUCGAAAUUCUUGUAACUCCUCCCUGAAGCCCAAAGCC____CAU ..((((((((((....(((.(((((((...)))))))......))).(((......)))..))))))))))......................................... (-25.11 = -25.45 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:23 2006