| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,635,181 – 7,635,279 |
| Length | 98 |
| Max. P | 0.500000 |
| Location | 7,635,181 – 7,635,279 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 74.52 |
| Mean single sequence MFE | -32.98 |
| Consensus MFE | -16.51 |
| Energy contribution | -16.68 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.50 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7635181 98 + 23771897 CUUUGGUACCGGUGCGUUGGCAUCGAAACUAAUAUCAAUCGGUAUUUCGGGCUUGGGCACAGGGCCAGGAAU------GGU---AGUGCUAUCA------GUGCCUUCGGAGA- ..(((((.((.((((.(.(((.(((((....(((((....))))))))))))).).)))).)))))))(((.------(((---(.((....))------.))))))).....- ( -31.70) >DroPse_CAF1 27438 110 + 1 UUUCGGAAUUGGUGCAGCGGCAUCAAAACUUAUAUCGAUCGGUAUGUCGGAUUUCUGCACUUGGCUGGGAAUAGUGGUGGU---GGUGCUAUCGGUGCCAGUGCCUUCGGAGA- ((((((((((((..(...(((((((..(((..(((...(((((..(((((....))).))...)))))..)))..)))..)---))))))....)..)))))...))))))).- ( -35.50) >DroGri_CAF1 21749 102 + 1 UUUCGGAACUGGUGUGCCGGCAUCAAAACCUAUAUCGAUCGGUAAGUCGGAUGGUUGCACUUGAUUUGGAAU------GGUGGUGGUGCUAUCG------GUGCCAUCUGAGAU ((((((((((((((..(((.(((((...((...(((((...((((.(.....).))))..)))))..))..)------)))).)))..).))))------))....))))))). ( -32.50) >DroWil_CAF1 37538 98 + 1 CUUUGGAACUGGUACGGCUGCAUCAAUGCUUAUAUCAAUUGGUAUAUCGGGUUUUUGCUCUUGACUUGGAAU------GGU---UGUGCUAUCG------GUAUCUUCGGAAG- ((((.(((..(((((.(..(((.((((...((((((....))))))(((((((.........)))))))...------.))---)))))...).------)))))))).))))- ( -22.90) >DroYak_CAF1 21121 98 + 1 UUUUGGAACCGGUGCGGCGGCAUCAAAACUAAUAUCAAUUGGUAUUUCGGGCUUCGGCACUGGGCCAGGAAU------GGU---GGUGCUAUCA------GUGCCUUCGGAGA- (((((((.(((((((.(.(((...(((((((((....)))))).)))...))).).)))))))((((....)------)))---((..(.....------)..))))))))).- ( -33.40) >DroMoj_CAF1 18887 99 + 1 CUUCGGAACUGGUGCAGAUGCAUCAACAUUUAUAUCGAUCGGUAUGUCUGAUUGCUGAACUUGAUUUGGAAU------GGU---GGUGCUAUCU------GUGCCUUCGGAGAU (((((((...((..(((((((((((.(((((..(((((((((((........))))))..)))))...))))------).)---))))).))))------)..))))))))).. ( -41.90) >consensus CUUCGGAACUGGUGCGGCGGCAUCAAAACUUAUAUCAAUCGGUAUGUCGGAUUUCUGCACUUGACUUGGAAU______GGU___GGUGCUAUCG______GUGCCUUCGGAGA_ (((((((..((((((....))))))...............(((((...........(((((..(((............)))...)))))...........)))))))))))).. (-16.51 = -16.68 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:22 2006