Locus 2726

Sequence ID 3L_DroMel_CAF1
Location 7,627,398 – 7,627,508
Length 110
Max. P 0.772293
window4269

overview

Window 9

Location 7,627,398 – 7,627,508
Length 110
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 85.01
Mean single sequence MFE -37.32
Consensus MFE -31.19
Energy contribution -30.53
Covariance contribution -0.66
Combinations/Pair 1.30
Mean z-score -1.94
Structure conservation index 0.84
SVM decision value 0.53
SVM RNA-class probability 0.772293
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7627398 110 + 23771897
--------UAUACUUACCCGUUGCCAAAUACUUGAGCGUUAUGGCCAGUCGUUCCUCGGCGCUGAAGGACUUCUUCUUGCGUUGCGGAGCAUACUGGCUAAUGAUGGGCUCCAGCUUU
--------........(((((((((((....))).))....((((((((.(((((.((((((.((((.....))))..)))))).)))))..))))))))..)))))).......... ( -42.50)
>DroVir_CAF1 20020 108 + 1
----------UGCUUACCCGUUGCCAAAUACUUGAGCGUUAUGGCCAGACGCUCCUCGGCGCUGAAGGAUUUCUUUUUGCGCUGAGGCGCAUACUGGCUAAUGAUGGGCUCCAGUUUC
----------......(((((((((((....))).))....(((((((..((.(((((((((.(((((....))))).))))))))).))...)))))))..)))))).......... ( -46.40)
>DroGri_CAF1 13148 118 + 1
AGUCAGUGAUUCCUUACCCGUUGCCAAAUACUUGAGCGUUAUGGCCAGUCGCUCCUCAGCGCUGAAGGAUUUCUUUUUGCGCUGUGGCGCAUACUGACUGAUGAUGGGCUCCAGUUUC
................((((((((((...((......))..))))(((((((.((.((((((.(((((....))))).)))))).)).)).....)))))..)))))).......... ( -39.10)
>DroWil_CAF1 24254 110 + 1
--------UGCACUUACCCGUCGCCAAAUACUUGAGCGUAAUGGCCAGACGCUCUUCGGCGCUGAAGGACUUUUUUUUGCGUUGAGGUGCAUACUGACUGAUGAUCGGCUCCAAUUUC
--------.........(((((((((..(((......))).))))(((..((.(((((((((.(((((....))))).))))))))).))...)))......)).))).......... ( -29.00)
>DroMoj_CAF1 10998 110 + 1
--------UUUGCUUACCCGUUGCCAAAUACUUGAGCGUUAUGGCCAGACGCUCCUCGGCGCUGAAAGAUUUCUUUUUGCGCUGCGGCGCAUACUGACUGAUAAUGGGCUCCAGUUUC
--------........((((((((((...((......))..))))(((..((.((.((((((.(((((....))))).)))))).)).))...)))......)))))).......... ( -35.10)
>DroAna_CAF1 12928 106 + 1
------------CAUACCCGUUGCCAAAUACUUGAGCGUUAUGGCCAGCCGCUCCUCGGCGCUGAAUGACUUCUUUUUGCGUUGUGGCGCGUAUUGGCUUAUGAUCGGCUCCAUCUUU
------------.....................(((((((((((((((.(((.((.((((((.(((........))).)))))).)).)))..))))).))))))..))))....... ( -31.80)
>consensus
________U_UACUUACCCGUUGCCAAAUACUUGAGCGUUAUGGCCAGACGCUCCUCGGCGCUGAAGGACUUCUUUUUGCGCUGAGGCGCAUACUGACUGAUGAUGGGCUCCAGUUUC
................((((((((((...((......))..))))(((..((.((.((((((.(((((....))))).)))))).)).))...)))......)))))).......... (-31.19 = -30.53 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:20 2006