Locus 2725

Sequence ID 3L_DroMel_CAF1
Location 7,624,123 – 7,624,223
Length 100
Max. P 0.500000
window4268

overview

Window 8

Location 7,624,123 – 7,624,223
Length 100
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 70.17
Mean single sequence MFE -20.04
Consensus MFE -3.86
Energy contribution -4.42
Covariance contribution 0.56
Combinations/Pair 1.09
Mean z-score -1.68
Structure conservation index 0.19
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7624123 100 - 23771897
ACCU---------------CCUUUACUUAUUAAACUAACUUUAAACAGUUAUUUUAAUAGUUAGAUUCUACACAACGGCAACGUAGA-AUGAUUUUUUAC----AUACAUAGGUCAGCUU
((((---------------...(((.((((((((.(((((......))))).)))))))).)))(((((.....(((....))))))-))..........----......))))...... ( -15.60)
>DroSec_CAF1 9241 104 - 1
ACCA---------------CCUUUACUUAUUAAACUAACUGUAAUCAGUUAUCUUAAUUGUUAGAUUCUACACAACGCCAAAGUAGA-AUGAUACUUUACAUACAUAAUUCGGUCAGCUU
(((.---------------.((..((..(((((..((((((....))))))..))))).)).))(((((((...........)))))-)).....................)))...... ( -15.40)
>DroSim_CAF1 9022 101 - 1
ACCA---------------CCUUUACUUAUUAAACUAACUGUAAUCAGUUAUCUUAAUUGUUAGAUUCUACACAACGCCAAAGUAGAAAUUAUGUUUUAC----AUAAUUCGGUCAGCUU
(((.---------------..(((((((.((((..((((((....))))))..))))(((((((...))).)))).....)))))))(((((((.....)----)))))).)))...... ( -16.80)
>DroEre_CAF1 9607 111 - 1
--AAUAGCUGCGUUCUAUACGUUGACUUG--AAACUCACUGUUAUGAGCUAUCUAAAGAGUUACAUUCUAUACAACGGCAAAGUAGA-ACGUUAAUUUGA----UUUGGUCGGUCAGCUA
--..((((((((((((((.(((((.....--...((((......))))........(((((...)))))...))))).....)))))-))))......((----((.....))))))))) ( -24.10)
>DroYak_CAF1 9772 113 - 1
ACUACAGCUGGUUGCUGGCCGUUGACUUA--AAACUAACUGUAAUCAGUUAUCUAAACUGUUACAUUCUAUACAACGUCGAAGUAGA-ACGUUAAUUCGA----UUCGGUCGGUAAUAUU
..........(((((((((((((((.(((--(.......(((((.(((((.....))))))))))((((((...........)))))-)..)))).))))----..)))))))))))... ( -28.30)
>consensus
ACCA_______________CCUUUACUUAUUAAACUAACUGUAAUCAGUUAUCUUAAUUGUUAGAUUCUACACAACGCCAAAGUAGA_AUGAUAAUUUAC____AUAAGUCGGUCAGCUU
...................................((((((....))))))...............(((((...........)))))................................. ( -3.86 =  -4.42 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:18 2006