Locus 2724

Sequence ID 3L_DroMel_CAF1
Location 7,621,752 – 7,621,868
Length 116
Max. P 0.634097
window4267

overview

Window 7

Location 7,621,752 – 7,621,868
Length 116
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 78.88
Mean single sequence MFE -22.40
Consensus MFE -7.99
Energy contribution -9.43
Covariance contribution 1.44
Combinations/Pair 1.24
Mean z-score -2.03
Structure conservation index 0.36
SVM decision value 0.21
SVM RNA-class probability 0.634097
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7621752 116 + 23771897
CAAAUAGCGAUGAAUAAAUUCCAAAUGCAUAGUGCAAUUUUGCAAUCUUAAUAAAUCCAUAAAUUUAUACAAUGAGAUUAGGCCUCAAUGCGCUUUGGAUCACACAAAUUAAACCU
...................(((((((((((...(((....)))(((((((((((((......))))))....)))))))........))))).))))))................. ( -18.10)
>DroSec_CAF1 6915 116 + 1
CAAAUAGCGAUGCAUAAAUUGCAAAUGCAUAGUGCAAUUUUCCAAUCUUAAUAAAACCGUAAAUUUAUAGAAUGAGAUUAGGACACAAUGCGCUUUGGAUAACACAAAUUAACGCA
......(((.((((.....)))).((.((.((((((....(((((((((((((((........)))))....))))))).))).....)))))).)).))............))). ( -25.90)
>DroSim_CAF1 6951 116 + 1
CAAAUAGCGAUGCAUAAAUUGCAAAUGCAUAGUGCAAUUUUCCAAUCUUAAUAAAACCGUAAAUUUAUAGAAUGAGAUUAGGCCCCAAUGCGCUUUGGAUAACACAAAUUAAAGCA
......((..((((.....)))).((.((.((((((.....((((((((((((((........)))))....))))))).))......)))))).)).)).............)). ( -21.90)
>DroEre_CAF1 7264 116 + 1
CAAAAAGCAAUGCAUAAAUUGCAGAUGCAUUGUGCAAUUUUGCAAUCUUAGUAUAGCCACAAAUUUAUAGAAUGACAUUCGGGCUCAUUGCAUUUCAGAUCACCCGAAUUAAGUCA
......((.((((.((((((((((((((.....)))..)))))))).))))))).))...............(((((((((((...(((........)))..)))))))...)))) ( -25.70)
>DroYak_CAF1 7393 100 + 1
CAAAUGGCAAUGCAUAAAUUGCAGAUGCAAAAGGCAAUUUUCCAAUCUUGGUAAAACCACAGAUGUAUAGAAU----------------GCAUUUUAGAUCGCACUAAUUAAGCUA
....((((..((((.....))))(((..((((.(((.(((....(((((((.....))).))))....))).)----------------)).))))..)))...........)))) ( -20.40)
>consensus
CAAAUAGCGAUGCAUAAAUUGCAAAUGCAUAGUGCAAUUUUCCAAUCUUAAUAAAACCAUAAAUUUAUAGAAUGAGAUUAGGCCUCAAUGCGCUUUGGAUCACACAAAUUAAACCA
......(((.((((.....))))..)))..((((((.......((((((((((((........)))))....))))))).........))))))...................... ( -7.99 =  -9.43 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:17 2006