Locus 2720

Sequence ID 3L_DroMel_CAF1
Location 7,591,019 – 7,591,122
Length 103
Max. P 0.670279
window4258

overview

Window 8

Location 7,591,019 – 7,591,122
Length 103
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 79.54
Mean single sequence MFE -36.55
Consensus MFE -23.55
Energy contribution -23.42
Covariance contribution -0.14
Combinations/Pair 1.22
Mean z-score -1.53
Structure conservation index 0.64
SVM decision value 0.29
SVM RNA-class probability 0.670279
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7591019 103 - 23771897
----------AUGCAUCG------GCAUUUGCAACUCGUUGAGCGAAACGCGCUCGAUGCUGCGCUCCACGCUCACCAGCAGAUUCUGCAGCAGUUGCGGCAGUUCACCGCAAUCGGAU
----------.(((..((------(.((((((....(((((((((.....)))))))))..(((.....)))......)))))).)))..)))(((((((.......)))))))..... ( -35.60)
>DroVir_CAF1 59849 101 - 1
------------CGAGCG------GCAUCUGCAGCUCGUUUAGCGACACGCGCUCAAUACUGCGCUCCACGCUCACAAGCAGAUUCUGCAGCAGCUGCGGCAACUCGAUGCCAUCGUUA
------------(((..(------(((((.((((((.(((.((((....((((........))))....)))).....((((...)))))))))))))(....)..)))))).)))... ( -40.30)
>DroEre_CAF1 36490 109 - 1
----------AUGCAUCGGCAUCGGCAUCUGCAGCUCGUUCAGUGAAACGCGCUCGAUGCUGCGCUCCACGCUCACCAGCAGAUUCUGCAGCAGUUGCGGCAGUUCCCCGCCAUCGGAU
----------..((..((((((((((....))(((.((((......)))).))))))))))).))(((..(((....))).((..((((.((....)).)))).)).........))). ( -34.60)
>DroMoj_CAF1 42305 101 - 1
------------CCAGCG------GCAUCUGCAGCUCGUUUAGCGACACGCGCUCAAUGCUGCGCUCCACGCUCACGAGCAAAUUCUGCAACAGCUGCGGCAACUCGAUGGCUUCGUUA
------------((((((------((...((((((((((..((((....((((........))))....)))).))))))......))))...)))))(....)....)))........ ( -34.80)
>DroAna_CAF1 35732 103 - 1
----------AUGCAACU------GCAUCUGGAGCUCGUUCAACGAAACACGCUCAAUGCUGCGCUCCACGCUCACCAGCAGAUUCUGCAACAGUUGGGGCAACUCGCCGCCAUCUGCC
----------.((((...------(.((((((((((((.....))).....((........)))))))..(((....))))))).))))).(((.((((((.....))).))).))).. ( -31.60)
>DroPer_CAF1 38778 113 - 1
GUUGGGGCAUCUGCAUCU------GCAUCUGCAGCUCGUUCAGUGACACGCGCUCAAUGCUGCGCUCCACGCUCACCAGCAGAUUCUGCAGCAGCUGCGGCAGCUCGCCGCCGUCUGUU
((((((((...(((....------)))...(((((..(((.((((.....)))).)))))))))))))).))......((((...))))((((((.(((((.....))))).).))))) ( -42.40)
>consensus
__________AUGCAUCG______GCAUCUGCAGCUCGUUCAGCGAAACGCGCUCAAUGCUGCGCUCCACGCUCACCAGCAGAUUCUGCAGCAGCUGCGGCAACUCGCCGCCAUCGGUU
............................((((((((.(((.((((....((((........))))....)))).....((((...)))))))))))))))................... (-23.55 = -23.42 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:09 2006