| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,589,018 – 7,589,114 |
| Length | 96 |
| Max. P | 0.531287 |
| Location | 7,589,018 – 7,589,114 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 84.10 |
| Mean single sequence MFE | -22.42 |
| Consensus MFE | -13.56 |
| Energy contribution | -14.37 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.77 |
| Structure conservation index | 0.60 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.531287 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7589018 96 + 23771897 UGAAA--AAAUCGCUGAGCAACUGGCAAAUUAGCAACAAUGUGAAGAAACAUUUUCGCAUUGUAACAAUUAAUAGCUGACCAAAAGGAUCGGGCU-UUA .....--.....(((((((.....))...))))).((((((((((((....))))))))))))............((((((....)).))))...-... ( -23.00) >DroVir_CAF1 58139 85 + 1 -C----GCACUC--UG--GCUCUGGCAAAUUAACAACAAUGCGAA-AAACAUUUUCGCGUCAUAACAAUUAAUAGCGAGC---AAGGAUCGCAGU-CGA -.----(((..(--(.--((((..((..(((((.....(((((((-(.....))))))))........))))).))))))---.))..).))...-... ( -16.92) >DroSec_CAF1 31267 98 + 1 UGAAAAAAAAUCGCUGAGCAACUGGCAAAUUAGCAACAAUGUGAAGAAAUAUUUUCGCAUUGUAACAAUUAAUAGCUGACCAAAAGGAUCGGACU-UUA ............(((((((.....))...))))).((((((((((((....))))))))))))..........((((((((....)).)))).))-... ( -23.00) >DroSim_CAF1 36230 95 + 1 UGAAA-AAAAUCACAGAGCAACUGGCAAAUUAGCAACAAUGUGAAGAAACAUUUUCGCAUUGUAACAAUUAAUAGCUGACCAAAAGGAUGGG-CU-UU- .....-.......(((.....)))((......)).((((((((((((....))))))))))))..........((((.(((....)).).))-))-..- ( -20.80) >DroEre_CAF1 34185 95 + 1 UGAAA-AAA---GCUGAGCGACUGGCAAAUUAGCAACAAUGUGAAGAAACAUUUUCGCAUUGUAACAAUUAAUAGCUGACCAAAAGGAUCGGACUUUUA .....-...---(((((((.....))...))))).((((((((((((....))))))))))))......(((.((((((((....)).)))).)).))) ( -23.70) >DroYak_CAF1 36644 97 + 1 UGAAA-AAAAAGGCUGAGCAACUGGCAAAUUAGCAACAAUGCGAAGAAACAUUUUCGCAUUGUAACAAUUAAUAGCUGACCAAAAGGAUCGGGCU-UUA .....-..((((.((((((.....((......)).((((((((((((....))))))))))))...........))...((....)).)))).))-)). ( -27.10) >consensus UGAAA_AAAAUCGCUGAGCAACUGGCAAAUUAGCAACAAUGUGAAGAAACAUUUUCGCAUUGUAACAAUUAAUAGCUGACCAAAAGGAUCGGACU_UUA ................(((.....((......)).((((((((((((....))))))))))))...........)))...................... (-13.56 = -14.37 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:08 2006