| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,586,488 – 7,586,581 |
| Length | 93 |
| Max. P | 0.856923 |
| Location | 7,586,488 – 7,586,581 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 74.27 |
| Mean single sequence MFE | -16.07 |
| Consensus MFE | -5.92 |
| Energy contribution | -7.45 |
| Covariance contribution | 1.53 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.37 |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.856923 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7586488 93 + 23771897 --CGGCAAUUUAAAACUUUAAUAA--CAAAUAGCCAAAUAUCAAUUGUUAGCCAUCAAACAUCAUUUGGCCAAAAGUAA-----CGGAAUCGCCGGCCAAAA --((((.((((...(((((..(((--((((((......)))...))))))((((............))))..)))))..-----..)))).))))....... ( -17.70) >DroSec_CAF1 28725 93 + 1 --CGGCAAUUUAAAACUUAAAUAA--CAAAUAGCCAAAUAUCAAUUGUAAGCCAUCAAACAUCAUUUGGCCAAAAGUAA-----CGGAAUCGCCGGCCAAAA --.(((..................--......(((((((.....(((........))).....))))))).........-----(((.....)))))).... ( -16.70) >DroSim_CAF1 33747 93 + 1 --CGGCAAUUUAAAACUUAAAUAA--CAAAUAGCCAAAUAUCGAUUGUAAGCCAUCAAACAUCAUUUGGCCAAAAGUAA-----CGGAAUCGCCGGCCAAAA --.(((..................--......(((((((...(.(((........))).)...))))))).........-----(((.....)))))).... ( -16.80) >DroYak_CAF1 34096 93 + 1 --CGGUAAAUUACAAAAUAAAUAA--CAAACAGCCACAUAUCAAUUGUUAGCCAUCAAACAAAAUGUGGCCAAAAGUAA-----CGGAAUCACCAGCCAAAU --.(((..................--......(((((((.....(((((........))))).))))))).........-----.((.....)).))).... ( -15.30) >DroAna_CAF1 31667 86 + 1 CAAGACACAUUAAAAAUUAAAUAA--AAAACAAC-GAGUAUCAAUUGUUGGCCAUCGAAGAUAAUUUGGCCAAAAGUAA-----CGG------CGGCCCA-- ........................--....((((-((.......))))))(((..((((.....))))(((........-----.))------))))...-- ( -13.80) >DroPer_CAF1 33427 92 + 1 ------AAAAUGAAAGAUGAAUGAAGUAACCUGCG--AAAUCAAUUGUUGGCCAUCGCAAACGAUUUGGCCAAAAAGAAACAAACGGAAA--ACGGCAAACG ------.........................(((.--..........((((((((((....)))..)))))))...........((....--.))))).... ( -16.10) >consensus __CGGCAAAUUAAAACUUAAAUAA__CAAACAGCCAAAUAUCAAUUGUUAGCCAUCAAACAUCAUUUGGCCAAAAGUAA_____CGGAAUCGCCGGCCAAAA ...(((..........................(((((((.....(((........))).....)))))))..............(((.....)))))).... ( -5.92 = -7.45 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:07 2006