Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 7,583,565 – 7,583,679 |
Length | 114 |
Max. P | 0.729687 |
Location | 7,583,565 – 7,583,679 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 83.85 |
Mean single sequence MFE | -26.88 |
Consensus MFE | -17.54 |
Energy contribution | -19.54 |
Covariance contribution | 2.00 |
Combinations/Pair | 1.18 |
Mean z-score | -2.04 |
Structure conservation index | 0.65 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.729687 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7583565 114 - 23771897 ACGGAACUUUGCAGCUUUUUAGGUUCGGUCAGCUAGAUUUAAUAGACCUAUUAACUGGUAAAAAGGAAA---CCCAUUAAUAAACUGUACUUAAGAAUCGAAGCUGACUUUCUAAUU ...((((((...........))))))((((((((.(((((...(((((........))).....((...---.))..............))...)))))..))))))))........ ( -24.30) >DroSec_CAF1 25828 114 - 1 ACGGAAUUUUGCAGCUUUUUAGGUUCGGUCAGCCAGCUUUAAUAGCCCUAUUAACGGGUAAAAUGGAAA---CCCAUUAAUGAACUGCACUUAAGAAUCUAAGCAGACUUUCUAAUU ..((((.(((((((.(((((((((.((((((.............((((.......))))..(((((...---.)))))..)).)))).))))))))).))..))))).))))..... ( -28.70) >DroSim_CAF1 30822 114 - 1 ACGGAAUUUUGCAGCUUUUUAGGUUCGGUCAGCUAGCUUUAAUAGCCCUAUUAACUGGUAAAAAGGAAA---CCCAUUAAUGAACUGCACUUAAGAAUCUAAGCAGACUUUCUAAUU ..((((.(((((((.(((((((((.(((((((((((..((((((....))))))))))).....((...---.)).....)).)))).))))))))).))..))))).))))..... ( -26.90) >DroEre_CAF1 28798 108 - 1 ACGCAAUUUUGCAGCUUUUUAGGUUCGGUCAGCUAUCUUUAAUAGCCCUAUUAAGUGGCAAAAAGGCAACCACCCAUCACUGACCUGUG---------CUUAUGCGACUUUCUAAUU .((((.((((((.((((..((((........(((((.....)))))))))..)))).))))))(((((......((....)).....))---------))).))))........... ( -25.20) >DroYak_CAF1 31220 114 - 1 ACGGAAUUUUGCAGCUUUUUAGGUGCAGUCAGCUAUUUUUAAUACCCCUAUUAAGUAGUAAAAGGGAAA---ACCAUCAUUGACCUGUAGCUAAGAAUCUUAGCAGACUUUCUAAUU ..((((.(((((((.(((((((.(((((((((((((..((((((....)))))))))))....((....---.)).....))).))))).))))))).))..))))).))))..... ( -29.30) >consensus ACGGAAUUUUGCAGCUUUUUAGGUUCGGUCAGCUAGCUUUAAUAGCCCUAUUAACUGGUAAAAAGGAAA___CCCAUUAAUGAACUGUACUUAAGAAUCUAAGCAGACUUUCUAAUU ..((((.(((((((.(((((((((.(((((((((((..((((((....))))))))))).....((.......)).....))).))).))))))))).))..))))).))))..... (-17.54 = -19.54 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:06 2006