| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,578,539 – 7,578,652 |
| Length | 113 |
| Max. P | 0.561011 |
| Location | 7,578,539 – 7,578,652 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 82.39 |
| Mean single sequence MFE | -17.96 |
| Consensus MFE | -12.29 |
| Energy contribution | -13.01 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.561011 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7578539 113 - 23771897 CAUACAUUUAACAAAUAGUCUUUAAGCUUU-UAUUU-UAGUAUUUACCAGUAAAUACUUUAUUUGCAAACGGCAAGAUACUCCUCGUUCAACAAGAGGACACAAAACAUUCCAUU .................(((..........-.....-.((((((((....))))))))....((((.....)))))))..(((((.........)))))................ ( -15.40) >DroSec_CAF1 20998 101 - 1 ------------AAAUAGUCUUUAUGCUUU-GAUUU-UAGUAUUUAUCAGUAAAUACUUUAUUUGCAAGCCGCAAGAUACUCCUCGUUCAACAAGAGGACACAAAACAUUCCAUU ------------.....(((((...((((.-(((..-.((((((((....))))))))..)))...))))...)))))..(((((.........)))))................ ( -18.60) >DroSim_CAF1 25906 100 - 1 ------------AAAUAGUCUUUAUGCU-U-GGUUU-UAGUAUUUAUCAGUAAAUACUUUAUUUGCAAACUGCAAGAUACUCCUCGUUCAACAAGAGGACACAAAACAUUCCAUU ------------.....((((((.((.(-(-((...-.((((((((....))))))))...(((((.....)))))...........)))))).))))))............... ( -17.90) >DroEre_CAF1 23929 110 - 1 -----ACUUAACAAAUAGUCUUUAAGUUUUUUUAUGGAAGUAUUUAUCAGUAAAUAAUUUUUUUUCCAGCCGCAAGACACUCUUCGUUCCGCAAGAGGACACAAAACAUUCCAUU -----............(((.....(((((....((((((((((((....))))))......)))))).....))))).(((((((...)).))))))))............... ( -15.80) >DroYak_CAF1 26271 114 - 1 CUUACAUUUAACAAAUAGUCUUCAAGUUUUUUACUG-GUGUAUUUAUCAGUAAAUACUUUAUUUGUAAACCGCAAGAUACUCCUCGUUCCACAAGAGGACACAAAACAUUCCAUU ..........(((((((......((((..(((((((-(((....)))))))))).)))))))))))....(....)....(((((.........)))))................ ( -22.10) >consensus _____A_UUAACAAAUAGUCUUUAAGCUUU_UAUUU_UAGUAUUUAUCAGUAAAUACUUUAUUUGCAAACCGCAAGAUACUCCUCGUUCAACAAGAGGACACAAAACAUUCCAUU .................(((((...((((.........((((((((....))))))))........))))...)))))..(((((.........)))))................ (-12.29 = -13.01 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:05 2006