| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,572,471 – 7,572,617 |
| Length | 146 |
| Max. P | 0.906074 |
| Location | 7,572,471 – 7,572,583 |
|---|---|
| Length | 112 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 77.99 |
| Mean single sequence MFE | -36.48 |
| Consensus MFE | -23.44 |
| Energy contribution | -22.88 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.695652 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7572471 112 + 23771897 UGGCCUUUCAUUC-UUCUUGAAUAUAUGUAAAAUUGCUUUCAGUGUACUCUGGGUGCAGGACCUGGUCUUGCACUUGGUUUUCGGUGGUUUCGGUGGUGCAACUGCCA------CUGCG ((((.....((((-.....))))...((((..((((...(((.((....(..((((((((((...))))))))))..)....)).)))...))))..))))...))))------..... ( -34.80) >DroSec_CAF1 14990 112 + 1 UAUCAUGUCAUUU-UUCUUGAACAUAUGUAGAAUUGUUUUCAGUGUACUCUGGGUGCAGGACCUGGUCUUGCACUUGGUUUUCGGUGGUUUUGGUGGUGCGACUGCCA------CUGCG ....((((((...-....)).))))..((((........(((.((....(..((((((((((...))))))))))..)....)).)))...(((..(.....)..)))------)))). ( -34.20) >DroEre_CAF1 17966 113 + 1 UGGGCUAUGACUUCAUGUGGUAGCUAUGCUGAUUCUUUUUCAGUGUACUCUGGGUGCGGGACCUGAUCUUGCACUUGGUUUUCGGUGGUUUCGGUGGUGCAAGUGCCA------CCGCA ..((((((.((.....)).))))))(((((((.......)))))))...(..(((((((((.....)))))))))..).............((((((((....)))))------))).. ( -42.50) >DroYak_CAF1 20267 109 + 1 UGGGCUUUGACUUCAUCUGGAAG----------ACUUUUUCAGUGUACUCUAGGUGCGGGACCUGAUCUUGCACUUGGUUUUCGGUGGUUUCGGUGGUGCAACUGCAACUGCCACUGCG ...((...((..(((.(((((((----------(((.....))).....((((((((((((.....))))))))))))))))))))))..))((..((((....)).))..))...)). ( -34.40) >consensus UGGCCUUUCACUU_AUCUGGAAGAUAUGUAGAAUCGUUUUCAGUGUACUCUGGGUGCAGGACCUGAUCUUGCACUUGGUUUUCGGUGGUUUCGGUGGUGCAACUGCCA______CUGCG ........................................(((((((((((((((((((((.....))))))))))))...((((.....)))).)))))).))).............. (-23.44 = -22.88 + -0.56)
| Location | 7,572,509 – 7,572,617 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 91.76 |
| Mean single sequence MFE | -43.22 |
| Consensus MFE | -31.85 |
| Energy contribution | -31.41 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.67 |
| Structure conservation index | 0.74 |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.906074 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7572509 108 + 23771897 UCAGUGUACUCUGGGUGCAGGACCUGGUCUUGCACUUGGUUUUCGGUGGUUUCGGUGGUGCAACUGCCA------CUGCG------ACUGGCCGUGCGCUAAUAAUAUUUAUCAGUGGCU ..(((((((.(..((((((((((...))))))))))..).....(((((((.(((((((......))))------))).)------))).)))))))))).................... ( -43.90) >DroSec_CAF1 15028 108 + 1 UCAGUGUACUCUGGGUGCAGGACCUGGUCUUGCACUUGGUUUUCGGUGGUUUUGGUGGUGCGACUGCCA------CUGCG------ACUGGCCGUGCGCUAAUAAUAUUUAUCAGUGGCU ..(((((((.(..((((((((((...))))))))))..)...(((((.((..(((..(.....)..)))------..)).------)))))..))))))).................... ( -42.20) >DroSim_CAF1 19885 108 + 1 UCAGUGUACUCUGGGUGCAGGACCUGGUCUUGCACUUGGUUUUCGGUGGUUUCGGUGGUGCGAUUGCCA------CUGCG------ACUGGCCGUGCGCUAAUAAUAUUUAUCAGUGGCU ..(((((((.(..((((((((((...))))))))))..).....(((((((.(((((((......))))------))).)------))).)))))))))).................... ( -43.90) >DroEre_CAF1 18005 108 + 1 UCAGUGUACUCUGGGUGCGGGACCUGAUCUUGCACUUGGUUUUCGGUGGUUUCGGUGGUGCAAGUGCCA------CCGCA------ACUGGCCGUGCGCUAAUAAUAUUUAUCAGUGGCU ..(((((((.(..(((((((((.....)))))))))..).....(((((((.((((((((....)))))------))).)------))).)))))))))).................... ( -43.20) >DroYak_CAF1 20296 120 + 1 UCAGUGUACUCUAGGUGCGGGACCUGAUCUUGCACUUGGUUUUCGGUGGUUUCGGUGGUGCAACUGCAACUGCCACUGCGACUGGGACUGGCCGUGCGCUAAUAAUAUUUAUCAGUGGCU ..(((((((.((((((((((((.....)))))))))))).(..((((.((...((..((((....)).))..))...)).))))..)......))))))).................... ( -42.90) >consensus UCAGUGUACUCUGGGUGCAGGACCUGGUCUUGCACUUGGUUUUCGGUGGUUUCGGUGGUGCAACUGCCA______CUGCG______ACUGGCCGUGCGCUAAUAAUAUUUAUCAGUGGCU ..(((.((((((((((((((((.....)))))))))))).....(((((......(((((((...((((...................))))..))))))).......)))))))))))) (-31.85 = -31.41 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:04 2006