| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,556,666 – 7,556,757 |
| Length | 91 |
| Max. P | 0.750693 |
| Location | 7,556,666 – 7,556,757 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 80.00 |
| Mean single sequence MFE | -18.65 |
| Consensus MFE | -10.15 |
| Energy contribution | -10.27 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.65 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.750693 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7556666 91 + 23771897 AUCUCGGCUACAUUGAGAAAAAGAAAAUCUGAAAAAUUGGUCCCUGCAAGGAGUGUUACCCAAAACACUCAACCAACAAUAAAACCAACCU .((((((.....))))))..................(((((.........(((((((......))))))).............)))))... ( -14.75) >DroSim_CAF1 3832 88 + 1 AUCUCGGCUACAUUGAGAAAAAGA---UAUGAAAAAUUGGUCCCUGUAAGGAGUGUUAACCAAAACACUAACUCAACAAUAAAACCAACUU .((((((.....))))))......---.........(((((.((.....))((((((......))))))..............)))))... ( -14.00) >DroYak_CAF1 4061 84 + 1 AUCUCGGCUACAUUGAGAAAAAGA---UCUGAAACAGUGGCCACUGUGUGGGGUGUUACCUAAAGCACACCCACAACAAUAAAACUU---- .....((((((.((.(((......---))).))...))))))..(((((((((((((......))))).))))).))).........---- ( -27.20) >consensus AUCUCGGCUACAUUGAGAAAAAGA___UCUGAAAAAUUGGUCCCUGUAAGGAGUGUUACCCAAAACACUCACACAACAAUAAAACCAAC_U .((((((.....))))))..................(((((((......)))(((((......)))))................))))... (-10.15 = -10.27 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:01 2006