| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,553,796 – 7,553,898 |
| Length | 102 |
| Max. P | 0.902485 |
| Location | 7,553,796 – 7,553,898 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 82.89 |
| Mean single sequence MFE | -18.52 |
| Consensus MFE | -13.03 |
| Energy contribution | -13.37 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.41 |
| Structure conservation index | 0.70 |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.902485 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7553796 102 + 23771897 AAGGCACACUAACCACAGCCCCUCCACCCAA-GCCAUGGUAAAAAAAAAAAAAACACAUGCCACAUCCUACCUGGGCCACAUGCAUGCCUAAUUUGUGUGCAU ...((((((..((((..((............-))..))))................(((((.....(((....)))......)))))........)))))).. ( -21.20) >DroSim_CAF1 1007 87 + 1 AAGGCACACUAGCCACAGCCCCUCCACCCAA-ACCAUGGUA---------------CAUACCACAUCCUACCUGGGCCACAUGCAUGCCUAAUUUGUGUGCAU ..(((......)))...((((..........-....((((.---------------...))))..........))))...((((((((.......)))))))) ( -19.05) >DroYak_CAF1 1026 93 + 1 AAGGCACAGCAACUGCAGCCCCUCCACCCAAAACCAUUGAAAA----------AAACAUACCACAUCCUACCUGGGCCACAUGCAUGCCUAAUUUGUGUGCAU ..(((...((....))...........................----------.............((.....)))))..((((((((.......)))))))) ( -15.30) >consensus AAGGCACACUAACCACAGCCCCUCCACCCAA_ACCAUGGUAAA__________A_ACAUACCACAUCCUACCUGGGCCACAUGCAUGCCUAAUUUGUGUGCAU ..(((......................(((......)))...........................((.....)))))..((((((((.......)))))))) (-13.03 = -13.37 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:00 2006