Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 7,547,499 – 7,547,589 |
Length | 90 |
Max. P | 0.901791 |
Location | 7,547,499 – 7,547,589 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 94.11 |
Mean single sequence MFE | -20.82 |
Consensus MFE | -17.70 |
Energy contribution | -18.03 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.12 |
Structure conservation index | 0.85 |
SVM decision value | 1.02 |
SVM RNA-class probability | 0.901791 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7547499 90 - 23771897 UUAGCCUUUUCAAUUUAAAAUGUAAAUCAAGUGUGAAAAACA-----AAAUCUGCAGCGAAAGUGUUGCAAUUGCAAUUUGCUCGUUGCGAUUUU ......((((((((((............)))).))))))..(-----(((((.(((((((....(((((....)))))....))))))))))))) ( -20.20) >DroPse_CAF1 11459 90 - 1 CCUGCCUUUUCAAUUUAAAAUGUAAAUCAAGUGUGAAAAACA-----AAAUCUGCAGCGAAAGUGUUGCAAUUGCAAUUUGCUCGUUGCGAUUUU ......((((((((((............)))).))))))..(-----(((((.(((((((....(((((....)))))....))))))))))))) ( -20.20) >DroGri_CAF1 11241 92 - 1 C---CGUUUUCAAUUUAAAAUGUAAAUCAAGUGUGAAAAACACAGAAAAAUCUGCAGCGAAAGUGUUGCAAUUGCAAUUUGCUCGUUGCAAGUUU .---((((((......))))))........((((.....))))....(((..((((((((....(((((....)))))....))))))))..))) ( -23.10) >DroSec_CAF1 16936 90 - 1 UUAGUCUUUUCAAUUUAAAAUGUAAAUCAAGUGUGAAAAACA-----AAAUCUGCAGCGAAAGUGUUGCAAUUGCAAUUUGCUCGUUGCGAUUUU ...((.((((((((((............)))).))))))))(-----(((((.(((((((....(((((....)))))....))))))))))))) ( -21.00) >DroAna_CAF1 9137 90 - 1 UUAGCCUUUUCAAUUUAAAAUGUAAAUCAAGUGUGAAAAACA-----AAAUCUGCAGCGAAAGUGUUGCAAUUGCAAUUUGCUCGUUGCGAUUUU ......((((((((((............)))).))))))..(-----(((((.(((((((....(((((....)))))....))))))))))))) ( -20.20) >DroPer_CAF1 11551 90 - 1 CCUGCCUUUUCAAUUUAAAAUGUAAAUCAAGUGUGAAAAACA-----AAAUCUGCAGCGAAAGUGUUGCAAUUGCAAUUUGCUCGUUGCGAUUUU ......((((((((((............)))).))))))..(-----(((((.(((((((....(((((....)))))....))))))))))))) ( -20.20) >consensus CUAGCCUUUUCAAUUUAAAAUGUAAAUCAAGUGUGAAAAACA_____AAAUCUGCAGCGAAAGUGUUGCAAUUGCAAUUUGCUCGUUGCGAUUUU ......((((((((((............)))).))))))........(((((.(((((((....(((((....)))))....)))))))))))). (-17.70 = -18.03 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:57 2006